View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_low_1 (Length: 482)
Name: NF11876_low_1
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 14757913 - 14757579
Alignment:
| Q |
1 |
gatgtgcagcaatcctacaaagtgcttctttctgattaagaatctcattcttcattgtctttgttgtaatagaatccaaggtattaagccatgaagtaca |
100 |
Q |
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| T |
14757913 |
gatgtgcagcaattctacaaagtgcttctttctgtttaagaatctcattctgcattgtctttgttgtaatagaatccaaggtattaagccatgaagtaca |
14757814 |
T |
|
| Q |
101 |
aatacggttcataatcggatcattattacggaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaatcacgttcatc |
200 |
Q |
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|||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
14757813 |
aatacgattcataatcggatcgttattacagaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaatcatgttcgtc |
14757714 |
T |
|
| Q |
201 |
ggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttg |
300 |
Q |
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| T |
14757713 |
ggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttg |
14757614 |
T |
|
| Q |
301 |
aagttggatgaggcataataccacaacctacccca |
335 |
Q |
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| T |
14757613 |
aagttggatgaggcataataccacaacctacccca |
14757579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 334 - 472
Target Start/End: Complemental strand, 14757520 - 14757382
Alignment:
| Q |
334 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
433 |
Q |
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| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
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| Q |
434 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
472 |
Q |
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| T |
14757420 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
14757382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 3614090 - 3613756
Alignment:
| Q |
1 |
gatgtgcagcaatcctacaaagtgcttctttctgattaagaatctcattcttcattgtctttgttgtaatagaatccaaggtattaagccatgaagtaca |
100 |
Q |
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|
|||||||| |||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3614090 |
gatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttgttgtaatagaatccaaggtattaagccatgaagtaca |
3613991 |
T |
|
| Q |
101 |
aatacggttcataatcggatcattattacggaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaatcacgttcatc |
200 |
Q |
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||||||||||||| || ||||||||| || ||||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
3613990 |
aatacggttcatattcagatcattataacagaatgtgcgatccttattgaggtgaagtagcccaaacagaccgataacattcaagcaaatcacgttcatc |
3613891 |
T |
|
| Q |
201 |
ggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttg |
300 |
Q |
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|| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||| |||||| |
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| T |
3613890 |
ggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctcttgatttgcaaaagaatccgtccaacaatactctttcaaggttcttg |
3613791 |
T |
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| Q |
301 |
aagttggatgaggcataataccacaacctacccca |
335 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
3613790 |
aagttggatgaggcataataccagaacctacccca |
3613756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 334 - 472
Target Start/End: Complemental strand, 3613697 - 3613559
Alignment:
| Q |
334 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
433 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
|
| Q |
434 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
472 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
3613597 |
agcattcaaaatgcccatatcacgtacatcaaagttcat |
3613559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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