View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_low_13 (Length: 240)
Name: NF11876_low_13
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 55371134 - 55370911
Alignment:
| Q |
1 |
gttggtcgataattggcaccgtcttcacagttccacatgaatggatcagtgactacaatgtgtggatcaatatagctaacattatgaatagggtatctac |
100 |
Q |
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| T |
55371134 |
gttggtcgataattgacaccgtcttcacagttccacatgaatggatcagtgactacaatgtgtggatcaatatagctaacattatgaatagggtatctac |
55371035 |
T |
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| Q |
101 |
cagaaggtgttcttagttcaagcttttgtgtatcagaacaagaaagaatgaatctgtaatatggacttccacagccatcatcaatggaaaaaggatattg |
200 |
Q |
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| T |
55371034 |
cagaaggtgttcttagttcaagcttttgtgtatcagaacaagaaagaatgaatctgtaatatggacttccacagccatcatcaatggaaaaaggatattg |
55370935 |
T |
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| Q |
201 |
gattggaatggaaccacatgaagt |
224 |
Q |
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| T |
55370934 |
gattggaatggaaccacatgaagt |
55370911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8515143 - 8515076
Alignment:
| Q |
1 |
gttggtcgataattggcaccgtcttcacagttccacatgaatggatcagtgactacaatgtgtggatc |
68 |
Q |
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| T |
8515143 |
gttggtcgaaaattttccccatcttcacatttccacatgaatggatcagtgacaacaatgtgaggatc |
8515076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 8515005 - 8514931
Alignment:
| Q |
136 |
gaacaagaaagaatgaatctgtaatatggacttccacagccatcatcaatggaaaaaggatattggattggaatg |
210 |
Q |
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| T |
8515005 |
gaacaagagagaatgtgtctatagtatggacttccacatccatcatcaatgctaaatggatatttgattgaaatg |
8514931 |
T |
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