View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_low_5 (Length: 338)
Name: NF11876_low_5
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 14617435 - 14617126
Alignment:
| Q |
15 |
tcaaacactggatatggcttccaccaaatccacaattg-taaaatctaaaaccttcatcaactatcacccacaaaggataacnnnnnnnntgccctggtg |
113 |
Q |
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| T |
14617435 |
tcaaacactgaacttggctttcaccaattccataattggtaaactctaaaactttcatcaactatcactcacaaaggctaacaaaaaaaatgccctggtg |
14617336 |
T |
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| Q |
114 |
ttggtgaaagaaaattatataaaggaattcagaccacaaggtatgattctatagcacaataaaaaggcatatttcacttttacacac--ttgtaatacaa |
211 |
Q |
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| T |
14617335 |
ttggtgaaagaaaattatataaaggaattcagaccacaaggtatgattctatagcacaataaaaaggcatatttcacttttacacacacttgtaatacaa |
14617236 |
T |
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| Q |
212 |
caagagagggaaactcaaataattacagtcgagaacgtaatattcaagtaagtcccgtcatgtttctgaagaagttctgtgatctggaccggctagaaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14617235 |
caagagagggaaactcaaataattacagtcgagaacgtaatattcaagtaagtcccgtcatgtttctgaagaagttctgtgatctggaccggctagaaca |
14617136 |
T |
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| Q |
312 |
atctgcaaat |
321 |
Q |
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|||||||||| |
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| T |
14617135 |
atctgcaaat |
14617126 |
T |
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