View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_low_6 (Length: 319)
Name: NF11876_low_6
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 6410285 - 6410428
Alignment:
| Q |
12 |
gagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcatacttttccggtttggaggagcataatc |
111 |
Q |
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| T |
6410285 |
gagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcatacttttccggtttggaggagcataatc |
6410384 |
T |
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| Q |
112 |
tggtttaatgtttctcaagtttatgtctatcttaaatatatcta |
155 |
Q |
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| T |
6410385 |
tggtttaatgtttctcaagtttatgtctatcttaaatatatcta |
6410428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 6410485 - 6410575
Alignment:
| Q |
212 |
gttaaatgcttggtgattttcattctttgatagttactcgtttcttgttttgatacaaatatattcaatgttattctgtcaaattcctgat |
302 |
Q |
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| T |
6410485 |
gttaaatgcttggtgattttcattctttgatagttactcgtttcttgttttgatacaaatatattcaatgttattctgtcaaattcctgat |
6410575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 6399471 - 6399398
Alignment:
| Q |
12 |
gagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcata |
85 |
Q |
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| T |
6399471 |
gagatggtcttattgatttgaatgagtttacaaggatgatgatgaatggcaagaaatgtgcctaagttatcata |
6399398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 6413031 - 6413104
Alignment:
| Q |
12 |
gagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcata |
85 |
Q |
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| T |
6413031 |
gagatggtcttattgatttgaatgagtttacaaggatgatgatgaatggcaagaaatgtgcctaagttatcata |
6413104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 6413268 - 6413348
Alignment:
| Q |
212 |
gttaaatgcttggtgattttcattcttt-gatagttactcgtttcttgttttgatacaaatatattcaatgttattctgtc |
291 |
Q |
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| T |
6413268 |
gttaaatgcttggtgattttcattcttttgatagttactggtttcatgttttgatacaagtatattcaatgttattttgtc |
6413348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 6402986 - 6402920
Alignment:
| Q |
12 |
gagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagt |
78 |
Q |
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| T |
6402986 |
gagatggtcttattgatttgaatgagtttacaaggatgatgatgagtggcaagaaatgtgtctaagt |
6402920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 6413168 - 6413217
Alignment:
| Q |
106 |
ataatctggtttaatgtttctcaagtttatgtctatcttaaatatatcta |
155 |
Q |
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| T |
6413168 |
ataatatggtttagtgtttctcaagtttttgtttatctttaatatatcta |
6413217 |
T |
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