View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11876_low_7 (Length: 313)

Name: NF11876_low_7
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11876_low_7
NF11876_low_7
[»] chr3 (12 HSPs)
chr3 (19-298)||(2312849-2313126)
chr3 (127-202)||(30672542-30672617)
chr3 (133-193)||(32711248-32711308)
chr3 (122-200)||(4980840-4980918)
chr3 (130-235)||(8036531-8036637)
chr3 (163-219)||(29384232-29384288)
chr3 (122-200)||(7138421-7138499)
chr3 (121-192)||(32711245-32711316)
chr3 (122-193)||(43132595-43132666)
chr3 (156-193)||(9236129-9236166)
chr3 (145-193)||(33700225-33700273)
chr3 (156-192)||(42898403-42898439)
[»] chr4 (15 HSPs)
chr4 (137-228)||(30206518-30206611)
chr4 (162-223)||(26863105-26863167)
chr4 (122-200)||(53359838-53359916)
chr4 (121-193)||(26066411-26066483)
chr4 (128-189)||(31372906-31372967)
chr4 (128-193)||(43117895-43117960)
chr4 (121-193)||(9909480-9909552)
chr4 (121-196)||(52072790-52072865)
chr4 (122-236)||(30206467-30206581)
chr4 (122-192)||(54569631-54569701)
chr4 (133-209)||(2296017-2296094)
chr4 (127-188)||(22235303-22235364)
chr4 (172-224)||(26863188-26863241)
chr4 (121-221)||(39897139-39897240)
chr4 (121-165)||(17655331-17655375)
[»] chr6 (9 HSPs)
chr6 (122-198)||(8380991-8381067)
chr6 (122-198)||(8920484-8920560)
chr6 (122-185)||(24265506-24265569)
chr6 (135-192)||(24089737-24089794)
chr6 (146-220)||(15132054-15132129)
chr6 (130-199)||(29028824-29028893)
chr6 (120-200)||(7649832-7649912)
chr6 (157-200)||(7257400-7257443)
chr6 (145-194)||(2284817-2284866)
[»] chr7 (13 HSPs)
chr7 (133-219)||(27322324-27322411)
chr7 (122-200)||(47140237-47140315)
chr7 (129-200)||(40324683-40324754)
chr7 (133-192)||(35436268-35436327)
chr7 (156-224)||(20559604-20559673)
chr7 (131-200)||(23854991-23855060)
chr7 (156-200)||(40332298-40332342)
chr7 (124-235)||(31685467-31685581)
chr7 (157-210)||(25695492-25695546)
chr7 (168-229)||(47140207-47140269)
chr7 (122-195)||(7430084-7430157)
chr7 (119-200)||(27045874-27045955)
chr7 (120-200)||(4047933-4048013)
[»] chr1 (7 HSPs)
chr1 (122-224)||(48377825-48377928)
chr1 (146-202)||(12018474-12018530)
chr1 (137-193)||(25554581-25554637)
chr1 (127-200)||(35790359-35790428)
chr1 (122-189)||(40609727-40609794)
chr1 (145-193)||(38590124-38590172)
chr1 (158-198)||(42803690-42803730)
[»] chr8 (8 HSPs)
chr8 (133-193)||(27789321-27789381)
chr8 (122-193)||(32549734-32549805)
chr8 (122-185)||(33059842-33059905)
chr8 (122-185)||(33058613-33058676)
chr8 (127-185)||(33057906-33057964)
chr8 (122-200)||(33058613-33058691)
chr8 (122-200)||(10107311-10107385)
chr8 (124-189)||(14067283-14067348)
[»] chr5 (15 HSPs)
chr5 (121-193)||(36409668-36409740)
chr5 (131-190)||(15969113-15969172)
chr5 (146-200)||(37322603-37322657)
chr5 (122-193)||(7212307-7212378)
chr5 (133-200)||(14107560-14107627)
chr5 (125-200)||(26636843-26636918)
chr5 (169-235)||(40736174-40736241)
chr5 (133-226)||(892555-892649)
chr5 (122-195)||(1420692-1420765)
chr5 (127-200)||(1950625-1950698)
chr5 (121-202)||(12569171-12569252)
chr5 (121-236)||(892581-892697)
chr5 (172-227)||(13654589-13654645)
chr5 (168-200)||(15911460-15911492)
chr5 (184-235)||(40736271-40736323)
[»] chr2 (16 HSPs)
chr2 (144-193)||(11030249-11030298)
chr2 (122-183)||(14796909-14796970)
chr2 (145-193)||(7833324-7833372)
chr2 (121-193)||(45651014-45651086)
chr2 (122-224)||(4860245-4860347)
chr2 (130-189)||(33543593-33543652)
chr2 (162-200)||(2568673-2568711)
chr2 (144-209)||(16408391-16408457)
chr2 (174-236)||(28936006-28936068)
chr2 (171-229)||(33775568-33775626)
chr2 (120-186)||(41190860-41190926)
chr2 (144-185)||(11532952-11532993)
chr2 (124-185)||(24765632-24765693)
chr2 (170-235)||(27964362-27964426)
chr2 (168-228)||(36129230-36129291)
chr2 (134-198)||(9002453-9002517)
[»] scaffold0194 (1 HSPs)
scaffold0194 (122-199)||(20111-20188)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 2312849 - 2313126
Alignment:
Q  19 tggttaccctcttccgttagtattctaaattttcttccttttttatggttaatgctgtttaatttgatgggttgaatgtgtgtgattgtgattggaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2312849 tggttaccctcttccgttagtattctaaattttcttccttttttatggttaatgctgtttaatttgatgggttgaatgtgtgtgattgtgattggaaata 2312948  T
Q  119 ctcttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttg-aaaatgaatatttgattataa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2312949 ctcttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaaatgaatatttgattataa 2313048  T
Q  218 tagtgaccggagtgagtaagtgattttgatgatttgtggtgttaataatgataaattattgttatttttgtgatttgatgt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  2313049 tagtgaccggagtgagtaagtgattttgatgatttgtggtgttaata---ataaattattgttatttttgtgatttgatgt 2313126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 30672617 - 30672542
Alignment:
Q  127 agatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaatg 202  Q
    ||||||||| |||||| ||| ||| ||||||||||||||  |||||||||||||||||| ||||||| | ||||||    
T  30672617 agatttattaaataactgatatatttggactatattataattcagatacatcaattatttaatgaatctaaaaatg 30672542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 32711248 - 32711308
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||||||  ||||||| ||| |||||||||| | |||||||||||||||||||||||||    
T  32711248 attgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaat 32711308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 4980840 - 4980918
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||| |||||||||  ||||||||| ||||||| || |  | |||||||| ||||||| ||||||||||||||    
T  4980840 ttttcagattaattgaataattgatgtatcttgactataataaagtttagatacataaattatttaatgaatttgaaaa 4980918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 8036637 - 8036531
Alignment:
Q  130 tttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaa-tttgaaaatgaatatttgattataatagtgaccgga 228  Q
    |||||||||||||   | |||||||||||||||||| |  | |||||||| ||||||||||||  |  ||||| |||||||| ||||||||||||||| |    
T  8036637 tttattgaataactagtttatctggactatattataaactaaatacatcagttattcaatgaacctaaaaaataaatatttgcttataatagtgaccgaa 8036538  T
Q  229 gtgagta 235  Q
    | |||||    
T  8036537 gggagta 8036531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 29384288 - 29384232
Alignment:
Q  163 atatatcagatacatcaattattcaatgaatttgaaaatgaatatttgattataata 219  Q
    |||||||| |||||||||||||| ||| ||||| |||| |||||||| |||||||||    
T  29384288 atatatcaaatacatcaattatttaataaatttaaaaaagaatatttaattataata 29384232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 7138499 - 7138421
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatc-agatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||| ||| |||||| ||||||| | |||||||||||| ||| |||||||||  ||||| ||||||||||||||    
T  7138499 ttttcagattcattaaataactgatgtatttagactatattata-atcgagatacatcggttatttaatgaatttgaaaa 7138421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 32711316 - 32711245
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaa 192  Q
    ||||| ||||| |||||||||  ||||||||||| ||||| ||||   || |||||||||||||||||||||    
T  32711316 ctttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 43132595 - 43132666
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||||||||||| |||||  |||||||||| |||||||||||  ||||||| || | ||||| |||||||    
T  43132595 ttttcagatttattaaataagtgatgtatctgaactatattataattcagatatattagttatttaatgaat 43132666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 9236166 - 9236129
Alignment:
Q  156 ctatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  9236166 ctatattctatatcagatacatcaattactcaatgaat 9236129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 33700273 - 33700225
Alignment:
Q  145 atgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||| | ||||||||||||| ||||||||||| |||||| |||||||    
T  33700273 atgtatttagactatattatatttcagatacatccattatttaatgaat 33700225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 42898403 - 42898439
Alignment:
Q  156 ctatattatatatcagatacatcaattattcaatgaa 192  Q
    |||||||||| | ||||||||||||||||||||||||    
T  42898403 ctatattatagaccagatacatcaattattcaatgaa 42898439  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 30206518 - 30206611
Alignment:
Q  137 aataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttg--aaaatgaatatttgattataatagtgaccgga 228  Q
    ||||||| |||||| ||| |||||||||| | ||||||||||||||||||||||||| ||  |||| ||||||||| |||||||||||||||||    
T  30206518 aataaccaatgtatttggtctatattataaaccagatacatcaattattcaatgaatctgaaaaaaggaatatttgtttataatagtgaccgga 30206611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 26863167 - 26863105
Alignment:
Q  162 tatatatcagatacatcaattattcaatgaatttgaaa-atgaatatttgattataatagtga 223  Q
    |||||||||||||||||||||||||||||||||| ||| || ||| |||| ||||||||||||    
T  26863167 tatatatcagatacatcaattattcaatgaatttaaaatataaatttttgtttataatagtga 26863105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 53359916 - 53359838
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||| ||| || ||  ||||||||||||||||||||||| |||  ||||||||||||| ||||||| ||||||    
T  53359916 ttttcagattcattaaagaaatgatgtatctggactatattatatttcacttacatcaattatttaatgaatctgaaaa 53359838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 26066483 - 26066411
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||| ||||| ||| |||||| ||||||||||| ||||||| || | | |||||||||||||||||||||||    
T  26066483 ctttttagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaat 26066411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 31372906 - 31372967
Alignment:
Q  128 gatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaat 189  Q
    ||||||||||||||  |||||||||| ||||||||||| |||| ||| |||| |||||||||    
T  31372906 gatttattgaataaatgatgtatctgaactatattatagatcaaatatatcatttattcaat 31372967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 43117895 - 43117960
Alignment:
Q  128 gatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||||||| ||||  ||||||| ||| ||||||| |||| || ||||||||||||||||||||||    
T  43117895 gatttattgcataaatgatgtatttggtctatattttataccaaatacatcaattattcaatgaat 43117960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 9909552 - 9909480
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||||||||| |||||||| |  |||||||||| ||||  ||||||||||||  |||| |||||||||||||    
T  9909552 cttttcagattcattgaatatctaatgtatctggtctatgatatatatcagatttatcagttattcaatgaat 9909480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 52072865 - 52072790
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttg 196  Q
    ||||| ||||| |||||||||| |||||||||    |||| ||||||| |||||||||||||||||| | ||||||    
T  52072865 ctttttagattaattgaataactgatgtatctaatttataatatatattagatacatcaattattcatttaatttg 52072790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 30206581 - 30206467
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaatgaatatttgattataatagt 221  Q
    |||||||||| |||||||||  |||||||||||  |||| |||| | || ||||||   ||||| || |||  |||||| |||| |||| ||||||||||    
T  30206581 ttttcagattcattgaataattgatgtatctggtttataatatagaccaaatacattggttatttaacgaacctgaaaaagaatctttgtttataatagt 30206482  T
Q  222 gaccggagtgagtaa 236  Q
    ||||| || ||||||    
T  30206481 gaccgaagggagtaa 30206467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 54569701 - 54569631
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaa 192  Q
    |||||||||| ||  |||||  ||||||||| ||||||||||||| | |||||||| ||||||| ||||||    
T  54569701 ttttcagattcatgaaataagtgatgtatctagactatattatatcttagatacattaattatttaatgaa 54569631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 2296094 - 2296017
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaattt-gaaaatgaatattt 209  Q
    ||||| |||| |||||||||||  | ||||||| || |||||||| | ||||||||| ||||| ||||||||||||||    
T  2296094 attgattaactgatgtatctggtttgtattataaattagatacattacttattcaataaatttggaaaatgaatattt 2296017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 22235364 - 22235303
Alignment:
Q  127 agatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaa 188  Q
    ||||| |||||||||| |||||||||||  ||||||| | |||| ||| |||||||||||||    
T  22235364 agattcattgaataactgatgtatctggtttatattaaagatcaaatatatcaattattcaa 22235303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 26863188 - 26863241
Alignment:
Q  172 atacatcaattattcaatgaatttgaa-aatgaatatttgattataatagtgac 224  Q
    |||||||||||||||||||||| | || | |||||||||| |||||||||||||    
T  26863188 atacatcaattattcaatgaatctaaagattgaatatttgtttataatagtgac 26863241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 39897139 - 39897240
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataata 219  Q
    ||||| ||||| |||||||||||||||||||||| ||| | |||  ||||||||||| |  ||| |||||||| | |||| || || |||| ||||||||    
T  39897139 ctttttagattcattgaataaccgatgtatctggtctaaaatattgatcagatacatgagatatgcaatgaatctaaaaagtggatttttgcttataata 39897238  T
Q  220 gt 221  Q
    ||    
T  39897239 gt 39897240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 17655375 - 17655331
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattata 165  Q
    ||||| || |||||||||||||| |||||||||| ||||||||||    
T  17655375 ctttttaggtttattgaataaccaatgtatctggtctatattata 17655331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 8380991 - 8381067
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaa 198  Q
    ||||||||||||||||||||   |||||| || | ||||||||| ||||||||||||||||||||||||||| ||||    
T  8380991 ttttcagatttattgaataattaatgtatttgaaatatattataaatcagatacatcaattattcaatgaatatgaa 8381067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 8920484 - 8920560
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaa 198  Q
    ||||| |||| |||||||||| |||||| || |||||||||||| |||| |||||||||||||||||| ||| ||||    
T  8920484 ttttctgattcattgaataactgatgtaccttgactatattataaatcaaatacatcaattattcaataaatctgaa 8920560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 24265506 - 24265569
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattatt 185  Q
    |||||||||| ||| |||||| ||||||| ||||||||||||||  ||||||||||||||||||    
T  24265506 ttttcagattcattaaataactgatgtatatggactatattataattcagatacatcaattatt 24265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 24089794 - 24089737
Alignment:
Q  135 tgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaa 192  Q
    |||||||||||||||| ||| | |||||||| || |||||||||||||||||||||||    
T  24089794 tgaataaccgatgtatgtggtcaatattatagattagatacatcaattattcaatgaa 24089737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 15132129 - 15132054
Alignment:
Q  146 tgtatctggactatattatatatcagatacatcaattattcaatgaatttgaa-aatgaatatttgattataatag 220  Q
    ||||| || |||||||||||  |||||||||||||||| |||||||| ||||| ||| |||||||| |||||||||    
T  15132129 tgtatttgaactatattataagtcagatacatcaattactcaatgaagttgaataattaatatttgtttataatag 15132054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 29028893 - 29028824
Alignment:
Q  130 tttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaa 199  Q
    ||||||||||||   |||||||||||||||| ||||  ||| |||| ||||||||| |||||||||||||    
T  29028893 tttattgaataattaatgtatctggactataatatagttcaaatacttcaattatttaatgaatttgaaa 29028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 7649832 - 7649912
Alignment:
Q  120 tcttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||| ||||| |||||||||  ||||||| ||| ||| | |||||| || ||| |||||||||||||||||||| ||||    
T  7649832 tctttttagattcattgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaatgaatttaaaaa 7649912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 7257400 - 7257443
Alignment:
Q  157 tatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||    
T  7257400 tatattatatatcaaatacattaattattcaatgaatttaaaaa 7257443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 2284866 - 2284817
Alignment:
Q  145 atgtatctggactatattatatatcagatacatcaattattcaatgaatt 194  Q
    |||||||||  |||||||||| ||||||||||| ||||||||||| ||||    
T  2284866 atgtatctgatctatattataaatcagatacattaattattcaataaatt 2284817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 27322324 - 27322411
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttg-aaaatgaatatttgattataata 219  Q
    |||||||||||||||||| |||||||||||||| | || ||||||  |||||| ||||||| || |||||||||||||| ||||||||    
T  27322324 attgaataaccgatgtatatggactatattataaaccaaatacatatattatttaatgaatctgaaaaatgaatatttgcttataata 27322411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 47140237 - 47140315
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||||||||||||||||||  |||| ||||| ||||||||||| || | ||||||||||||||||| |||| ||||||    
T  47140237 ttttcagatttattgaataattgatgcatctgaactatattataaattaaatacatcaattattcaacgaatctgaaaa 47140315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 40324754 - 40324683
Alignment:
Q  129 atttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||||||| ||||||||||| |||||||||| | |||||  |||||| ||||||||||| ||||||    
T  40324754 atttattgaataactgatgtatctggtctatattataaaccagattaatcaataattcaatgaatctgaaaa 40324683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 35436268 - 35436327
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaa 192  Q
    ||||||||||  |||||||||| | ||||||||||  |||||||||||||||||||||||    
T  35436268 attgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaa 35436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 20559673 - 20559604
Alignment:
Q  156 ctatattatatatcagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataatagtgac 224  Q
    ||||||||||||  | |||||||| ||||||||||||||| |||| ||| |||||| |||||||||||||    
T  20559673 ctatattatatacaaaatacatcagttattcaatgaatttaaaaagtgattatttgtttataatagtgac 20559604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 23854991 - 23855060
Alignment:
Q  131 ttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||||||||||  | |||| ||| ||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  23854991 ttattgaataactaaggtatatggtctataatatagatctgatacatcaatcattcaatgaatttgaaaa 23855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 40332342 - 40332298
Alignment:
Q  156 ctatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||    
T  40332342 ctatattataaatcatatacatgaattattcaatgaatttgaaaa 40332298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 31685581 - 31685467
Alignment:
Q  124 ttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa-tgaatatt--tgattataatag 220  Q
    |||||||| ||| |||| | ||||||||| ||||||| |||| | ||||||||||||  ||||||||||  ||||||  |||||||  |  |||||||||    
T  31685581 ttcagattcattcaatatctgatgtatcttgactatactataaaccagatacatcaacgattcaatgaacctgaaaagagaatatttctttttataatag 31685482  T
Q  221 tgaccggagtgagta 235  Q
    ||||||||| |||||    
T  31685481 tgaccggagggagta 31685467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 25695546 - 25695492
Alignment:
Q  157 tatattatatatcagatacatcaattattcaatgaatttgaaaat-gaatatttg 210  Q
    ||||||| | ||||||||||||||||||||||||||  ||||||| |||||||||    
T  25695546 tatattacaaatcagatacatcaattattcaatgaacgtgaaaatggaatatttg 25695492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 47140269 - 47140207
Alignment:
Q  168 tcagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataatagtgaccggag 229  Q
    |||||| ||||||||||||||| ||| |||||| | |||||||  ||||||||||||||||||    
T  47140269 tcagatgcatcaattattcaataaatctgaaaaataaatatttatttataatagtgaccggag 47140207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 7430157 - 7430084
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaattt 195  Q
    ||||| |||| ||| |||||| ||||||||||| ||||||| || | || |||||| ||||||||| |||||||    
T  7430157 ttttctgattcattaaataactgatgtatctggtctatattgtaaaccaaatacataaattattcactgaattt 7430084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 27045874 - 27045955
Alignment:
Q  119 ctcttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||| |||| ||| |||||| ||||||||  ||  ||||||||  |||||||||| | ||||||||||||| ||||||    
T  27045874 ctcttttcggattcatttaataactgatgtatcaagataatattatagttcagatacataagttattcaatgaatctgaaaa 27045955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 4047933 - 4048013
Alignment:
Q  120 tcttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||| ||||||| |||||  ||||||| || |||||||||||  ||||||||||| | | || ||||||| ||||||    
T  4047933 tcttttcatatttattaaataattgatgtatttgaactatattataattcagatacatctaatgtttaatgaatctgaaaa 4048013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 48377825 - 48377928
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaatga-atatttgattataatag 220  Q
    ||||||||||||||||||||  ||||||| | | |||||||||| |||| |||| ||| ||||||||||||| |||| |||| || |||| |||||||||    
T  48377825 ttttcagatttattgaataattgatgtatttagtctatattataaatcaaatacgtcacttattcaatgaatatgaatatgagatttttgtttataatag 48377924  T
Q  221 tgac 224  Q
    ||||    
T  48377925 tgac 48377928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 12018474 - 12018530
Alignment:
Q  146 tgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaatg 202  Q
    ||||||||  ||||||||||| |||||||||||||||||| ||||||| | ||||||    
T  12018474 tgtatctgagctatattatatttcagatacatcaattatttaatgaatctaaaaatg 12018530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 25554637 - 25554581
Alignment:
Q  137 aataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||| ||||||| ||| ||||| ||||||||| |||||||| |||||||||||||    
T  25554637 aataactgatgtatttggcctatagtatatatcacatacatcatttattcaatgaat 25554581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 35790428 - 35790359
Alignment:
Q  127 agatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||||||||    ||||||||   ||||| |||||||| |||||||||||||||||||||||| ||||    
T  35790428 agatttattgaataa----tgtatctgacttatatcatatatcaaatacatcaattattcaatgaatttaaaaa 35790359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 40609727 - 40609794
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaat 189  Q
    |||||| ||| |||||||||| ||||||| | ||| ||||||||| ||||| |||| |||||||||||    
T  40609727 ttttcatattcattgaataactgatgtattttgacaatattatatgtcagacacattaattattcaat 40609794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 38590124 - 38590172
Alignment:
Q  145 atgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||| ||| ||||||| |||| ||||||||||||||| |||||||||    
T  38590124 atgtatttggtctatattctataccagatacatcaattactcaatgaat 38590172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 42803690 - 42803730
Alignment:
Q  158 atattatatatcagatacatcaattattcaatgaatttgaa 198  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  42803690 atatcataaatcagatatatcaattattcaatgaatttgaa 42803730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 27789381 - 27789321
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||||||| ||||||| ||| | |||||||||| |||||||||||||||||||||||||    
T  27789381 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 27789321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 32549805 - 32549734
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||| ||||| ||| ||||| ||||||||||||||||||||||||  ||||||||||| ||||| |||||||    
T  32549805 ttttgagattcattaaataaacgatgtatctggactatattatattccagatacatcagttatttaatgaat 32549734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 33059842 - 33059905
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattatt 185  Q
    |||||||||| ||| |||||  ||||||||||||||||||||||  |||||| |||||||||||    
T  33059842 ttttcagattcattaaataattgatgtatctggactatattataattcagatgcatcaattatt 33059905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 33058613 - 33058676
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattatt 185  Q
    |||||||||| ||| |||||  |||||||||| |||||||||||  |||||| |||||||||||    
T  33058613 ttttcagattcattaaataattgatgtatctgaactatattataattcagatgcatcaattatt 33058676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 33057906 - 33057964
Alignment:
Q  127 agatttattgaataaccgatgtatctggactatattatatatcagatacatcaattatt 185  Q
    ||||| ||| |||||  ||||||| ||||||||||||||  ||||||||||||||||||    
T  33057906 agattcattaaataattgatgtatttggactatattataattcagatacatcaattatt 33057964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 33058691 - 33058613
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||| ||||||||| |||||  |||| ||||| | |||| ||||  |||||||||||||||||| ||||||| ||||||    
T  33058691 tttttagatttattaaataattgatgcatctgaattataatatagttcagatacatcaattatttaatgaatctgaaaa 33058613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 10107385 - 10107311
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||||| || |||||||||| ||||||||||| ||||||||     || |||||| ||||||||||||||| ||||||    
T  10107385 ttttcagtttcattgaataactgatgtatctggtctatattac----catatacattaattattcaatgaatctgaaaa 10107311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 14067348 - 14067283
Alignment:
Q  124 ttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaat 189  Q
    ||||||||||||||||||  |||| || ||  |||||||||| ||||||||||| || ||||||||    
T  14067348 ttcagatttattgaataattgatgcatgtgatctatattataaatcagatacattaaatattcaat 14067283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 36409668 - 36409740
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||| |||||||||||||||  ||| ||| ||| |||||| |||||||| |||||||| |||||||||||||    
T  36409668 ctttttagatttattgaataaatgatatatgtggtctatatcatatatcacatacatcatttattcaatgaat 36409740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 15969172 - 15969113
Alignment:
Q  131 ttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatg 190  Q
    |||||||||||| ||||||| ||| |||||||||| |||||||| ||||| |||||||||    
T  15969172 ttattgaataactgatgtatatggtctatattatagatcagatatatcaagtattcaatg 15969113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 37322603 - 37322657
Alignment:
Q  146 tgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||||| | ||||||| || | ||||||||||||||||||||||||||||||||    
T  37322603 tgtatctagtctatattttagaccagatacatcaattattcaatgaatttgaaaa 37322657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 7212307 - 7212378
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||||||| ||| |||||  ||||||||| || |||||||| | | |||||||||||||||| |||||||    
T  7212307 ttttcagattcattaaataagtgatgtatctagattatattatgttttagatacatcaattatttaatgaat 7212378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 14107627 - 14107560
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||||| ||||||| | |||||||||| |  | ||| |||| ||||||||||||||||||||    
T  14107627 attgaataaccggtgtatctcgtctatattatagactaaataaatcatttattcaatgaatttgaaaa 14107560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 26636918 - 26636843
Alignment:
Q  125 tcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||||||||| |||||  |||||||||  |||||||||| | | |||||||||| ||||| ||||||| ||||||    
T  26636918 tcagatttattaaataagtgatgtatctaaactatattatgttttagatacatcatttatttaatgaatctgaaaa 26636843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 40736241 - 40736174
Alignment:
Q  169 cagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataatagtgaccggagtgagta 235  Q
    ||||||||||| |||||||||||| ||||||| || || |||| ||||||||||||| |||| |||||    
T  40736241 cagatacatcagttattcaatgaagttgaaaagtggatttttgcttataatagtgacaggagggagta 40736174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 892649 - 892555
Alignment:
Q  133 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataatagtgaccg 226  Q
    |||||||||| ||||||||| |  |||| |||| | || |||||| ||||||||||||||| | |||| ||||| |||| |||||||||| ||||    
T  892649 attgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatctaaaaagtgaatttttgcttataatagtaaccg 892555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 1420692 - 1420765
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaattt 195  Q
    |||| |||||||||||| |||  |||||| ||| ||||| |||| || |||||||||||||||| ||| |||||    
T  1420692 tttttagatttattgaacaacttatgtatttggtctataatatagataagatacatcaattattaaataaattt 1420765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 1950625 - 1950698
Alignment:
Q  127 agatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||| ||| |||||| ||||||| ||||||||||||||    |||||||||| ||||| ||||||||| ||||    
T  1950625 agattcattaaataactgatgtatttggactatattataatagagatacatcagttatttaatgaatttaaaaa 1950698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 12569171 - 12569252
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaatg 202  Q
    ||||||||||| |||  ||||| ||||||||  | ||||| ||||   || |||||||||||||||| ||||||||||||||    
T  12569171 cttttcagattcattttataactgatgtatccagtctatactataacccaaatacatcaattattcattgaatttgaaaatg 12569252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 892581 - 892697
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataata 219  Q
    ||||| ||||| |||||||||   |||||| ||  ||||| ||||||  |||||||||  ||||||||||||||| |||| | ||| |||| |||||||     
T  892581 ctttttagattcattgaataattaatgtatttgttctatactatatactagatacatccgttattcaatgaattttaaaagtaaatttttgcttataatt 892680  T
Q  220 gtgaccggagtgagtaa 236  Q
    |||||||| | ||||||    
T  892681 gtgaccggcgagagtaa 892697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 13654589 - 13654645
Alignment:
Q  172 atacatcaattattcaatgaatttgaaaa-tgaatatttgattataatagtgaccgg 227  Q
    |||||||| ||||| ||||||||| |||| ||||| |||| ||||||||||||||||    
T  13654589 atacatcatttattgaatgaatttaaaaagtgaatttttgcttataatagtgaccgg 13654645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 15911460 - 15911492
Alignment:
Q  168 tcagatacatcaattattcaatgaatttgaaaa 200  Q
    |||||||||||||||||||||| ||||||||||    
T  15911460 tcagatacatcaattattcaataaatttgaaaa 15911492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 40736271 - 40736323
Alignment:
Q  184 ttcaatgaatttgaaaa-tgaatatttgattataatagtgaccggagtgagta 235  Q
    |||||||||| |||||| ||||| |||| |||||||||||||||||| |||||    
T  40736271 ttcaatgaatctgaaaactgaatctttgcttataatagtgaccggagggagta 40736323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 11030249 - 11030298
Alignment:
Q  144 gatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  11030249 gatgtatttggtctatattctatatcagatacatcaattactcaatgaat 11030298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 14796909 - 14796970
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaatta 183  Q
    |||||| ||||||| |||||  ||||||||| | |||||||||| |||||||||||||||||    
T  14796909 ttttcaaatttatttaataaatgatgtatctagtctatattataaatcagatacatcaatta 14796970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 7833372 - 7833324
Alignment:
Q  145 atgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    |||||||||  ||||||| || |||||||||||||||||||||||||||    
T  7833372 atgtatctgatctatattttaaatcagatacatcaattattcaatgaat 7833324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 45651014 - 45651086
Alignment:
Q  121 cttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 193  Q
    ||||| || ||||||||||||| |||| |||||  ||||| |||| | |||||||||||||||||||| ||||    
T  45651014 ctttttaggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaat 45651086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 4860347 - 4860245
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaatg-aatatttgattataatag 220  Q
    |||| ||||||||| ||| ||  ||||||||||  ||||| ||| | ||||||||||| ||||||||||||| |||||||| ||  |||| |||||||||    
T  4860347 tttttagatttattaaatgactaatgtatctggtttatat-atagaccagatacatcagttattcaatgaatctgaaaatgtaaattttgcttataatag 4860249  T
Q  221 tgac 224  Q
    ||||    
T  4860248 tgac 4860245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 33543593 - 33543652
Alignment:
Q  130 tttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaat 189  Q
    ||||||||||||| ||||||||||  |||||||||| |  |||||||||| |||||||||    
T  33543593 tttattgaataacggatgtatctgacctatattatagaaaagatacatcagttattcaat 33543652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 2568711 - 2568673
Alignment:
Q  162 tatatatcagatacatcaattattcaatgaatttgaaaa 200  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  2568711 tatatatcagatacatcaaatattcaatgaatctgaaaa 2568673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 16408457 - 16408391
Alignment:
Q  144 gatgtatctggactatattatatatcagatacatcaattattcaatgaatttg-aaaatgaatattt 209  Q
    ||||||| ||| ||| |||||| |||| |||||||| |||||||||||| ||| |||||||||||||    
T  16408457 gatgtatttggtctaaattataaatcaaatacatcatttattcaatgaacttgaaaaatgaatattt 16408391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 28936068 - 28936006
Alignment:
Q  174 acatcaattattcaatgaatttgaaaatgaatatttgattataatagtgaccggagtgagtaa 236  Q
    |||||| ||||||||||||  | ||||||||| |||| |||||||| ||||||||| ||||||    
T  28936068 acatcagttattcaatgaaccttaaaatgaatctttgcttataataatgaccggagggagtaa 28936006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 33775568 - 33775626
Alignment:
Q  171 gatacatcaattattcaatgaatttgaaaatgaatatttgattataatagtgaccggag 229  Q
    |||||||||||||||||| ||| || ||||||||| |||| |||||| ||||| |||||    
T  33775568 gatacatcaattattcaacgaacttaaaaatgaatctttgcttataacagtgatcggag 33775626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 41190926 - 41190860
Alignment:
Q  120 tcttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattc 186  Q
    |||||| ||||||||| |||||| ||| ||| || |||||||||||  ||| |||||||||||||||    
T  41190926 tctttttagatttattaaataactgatatatttgaactatattatagttcaaatacatcaattattc 41190860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 11532952 - 11532993
Alignment:
Q  144 gatgtatctggactatattatatatcagatacatcaattatt 185  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  11532952 gatgtatctgtattatattatatttcagatacatcaattatt 11532993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 24765693 - 24765632
Alignment:
Q  124 ttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattatt 185  Q
    |||||||||||| |||||  |||||||||| |||||||||||  | ||||||||| ||||||    
T  24765693 ttcagatttattaaataaatgatgtatctgaactatattatacttgagatacatcgattatt 24765632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 27964362 - 27964426
Alignment:
Q  170 agatacatcaattattcaatgaatttgaaaatgaatatttgattataatagtgaccggagtgagta 235  Q
    |||||||||| ||||| ||||||| | ||||||| | |||| |||||||||||||||||| |||||    
T  27964362 agatacatcatttattaaatgaatct-aaaatgattttttgtttataatagtgaccggagggagta 27964426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 36129230 - 36129291
Alignment:
Q  168 tcagatacatcaattattcaatgaatttgaaaa-tgaatatttgattataatagtgaccgga 228  Q
    |||||| ||||||||||||||||||||| |||| || || |||| |||||||| ||||||||    
T  36129230 tcagatgcatcaattattcaatgaatttaaaaagtgtatttttgcttataataatgaccgga 36129291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 9002517 - 9002453
Alignment:
Q  134 ttgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaa 198  Q
    ||||||||  ||| ||| ||| ||||||||||||||| |||||| | ||||||||||||| ||||    
T  9002517 ttgaataattgatatatttggtctatattatatatcaaatacataagttattcaatgaatctgaa 9002453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 20188 - 20111
Alignment:
Q  122 ttttcagatttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaa 199  Q
    |||||||||| ||||||||| | |||||||| | |||||  |||||  | |||||||||| ||||||||||| |||||    
T  20188 ttttcagattcattgaataatcaatgtatctagtctataaaatatacaaaatacatcaatcattcaatgaatctgaaa 20111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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