View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11877_high_12 (Length: 354)
Name: NF11877_high_12
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 49534718 - 49534391
Alignment:
| Q |
13 |
agatggcctaattacagctccacacaatatttccaaaaattcaagacatttgaatttttattaatatatctgttcaagtgtttattataagtcatagttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49534718 |
agatggcctaattacagctccacacaatatttccaaaaattcaagacatttgaatttttattaatatatctgttcaagtgtttattataagtcatagttt |
49534619 |
T |
|
| Q |
113 |
atagcttttcagtatcctccgactccaagtgtgtgtattatgtgaggattgatctgcaaaattttccataaagttcatcattaacttaatgagctaagtc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49534618 |
atagcttttcagtatcctccgactccaagtgtgt--attatgtgaggattgaactgcaaaattttccataaagttcatcattaacttaatgagctaagtc |
49534521 |
T |
|
| Q |
213 |
atagttatttagtttccagctatagttcaaatttgaggataaaagtaccaactagactgtgaagtcgagcattaaaactgataagttgggagaatgactt |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49534520 |
atagttatttagtttccagctataattcaaatttgaggataaaagtaccaactaaactgtgaagtcgagcattaaaactgataagttgggagaatgactt |
49534421 |
T |
|
| Q |
313 |
aaagtttcgatcctgagaatggtaaaaact |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49534420 |
aaagtttcgatcctgagaatggtaaaaact |
49534391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 145 - 342
Target Start/End: Complemental strand, 49109645 - 49109450
Alignment:
| Q |
145 |
gtgtattatgtgaggattgatctgcaaaattttccataaagttcatcattaacttaatgagctaagtcatagttatttagtttccagctatagttcaaat |
244 |
Q |
| |
|
||||||||| ||||| |||| ||||| || |||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
49109645 |
gtgtattatatgagggttgaattgcaattttctccatacagttcatcattgact-aatgagctaagtcatagttatttagtttctagctataattcaaat |
49109547 |
T |
|
| Q |
245 |
ttgaggataaaagtaccaactagactgtgaagtcgagcattaaaactgataagttgggagaatgacttaaagtttcgatcctgagaatggtaaaaact |
342 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| || ||||| | ||||||| ||||||| |||||||||||||| |
|
|
| T |
49109546 |
ttgaggataaaagtaccaactaaactgtgaactcgatcattaaaactgataagttgtgacaatga-tcaaagtttagatcctgggaatggtaaaaact |
49109450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 296
Target Start/End: Complemental strand, 49107967 - 49107772
Alignment:
| Q |
95 |
tattataagtcatagtttatagcttttcagtatcctccgactccaagtgtgtgtattatgtgaggattgatctgcaaaattttccataaagttcatcatt |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | | |||||| ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
49107967 |
tattataagtcatagtttatggcttttcagtatcctccaa--------gagtgtatcatgtgaggattgaattgcaattttttccataaagttcatcatt |
49107876 |
T |
|
| Q |
195 |
aacttaatgagctaagtcatagttatttagtttccagctatagtt----caaatttgaggataaaagtaccaactagactgtgaagtcgagcattaaaac |
290 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
49107875 |
gact-aatgagctaagtcatagttatt-agtttgtagctatatataagtcaaatttgaggataaaagtaccaactagactgtgaactggggcattaaaac |
49107778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 49108008 - 49107963
Alignment:
| Q |
30 |
ctccacacaatatttccaaaaattcaagacatttgaatttttatta |
75 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
49108008 |
ctccacacaatatttccacaaatataagacatttgaatttgtatta |
49107963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University