View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_high_27 (Length: 202)
Name: NF11877_high_27
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2203718 - 2203823
Alignment:
| Q |
1 |
gtttgtggcgtccgctggtatcaacaattataagatcacagttttgttccttgaatctctccacaccttccacaacaattttgaaaggatctgactccat |
100 |
Q |
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||||||| || || || |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||| | ||||||||||||||| |
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| T |
2203718 |
gtttgtgccgcccactagtatcaacaattataagatcacagttttctttcttgaatctttccacaccttccacagcaattttcacaggatctgactccat |
2203817 |
T |
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| Q |
101 |
ctagct |
106 |
Q |
| |
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||||| |
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| T |
2203818 |
atagct |
2203823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 2204794 - 2204877
Alignment:
| Q |
105 |
cttccacaaaaaggaattttagctttagtggcattctgcttcaattgatcaaatgcaccagctctaaatgtatctgcacatact |
188 |
Q |
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|||||| | ||||| || |||||||| || ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| |
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| T |
2204794 |
cttccatagaaagggatcttagctttggttgcattttgcttcaactgatcaaacgcaccagctctgaatgtatctgcacatact |
2204877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 44826393 - 44826288
Alignment:
| Q |
1 |
gtttgtggcgtccgctggtatcaacaattataagatcacagttttgttccttgaatctctccacaccttccacaacaattttgaaaggatctgactccat |
100 |
Q |
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||||||| || || |||||||||||||||||||||||| || || |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
44826393 |
gtttgtgccgcccactggtatcaacaattataagatcatggtcttcttccttgaatctttccacaccttccacagcaattttgacaggatctgactccat |
44826294 |
T |
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| Q |
101 |
ctagct |
106 |
Q |
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||||| |
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|
| T |
44826293 |
atagct |
44826288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 44824080 - 44824001
Alignment:
| Q |
105 |
cttccacaaaaaggaattttagctttagtggcattctgcttcaattgatcaaatgcaccagctctaaatgtatctgcaca |
184 |
Q |
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|||||| ||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824080 |
cttccataaaaagggatcttagctttagtagcattttgcttcaattgatcaaatgcaccagctctaaatgtatctgcaca |
44824001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 33167711 - 33167778
Alignment:
| Q |
15 |
ctggtatcaacaattataagatcacagttttgttccttgaatctctccacaccttccacaacaatttt |
82 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||| |||||||| |||||||| |||||||| |
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| T |
33167711 |
ctggtatcaacacttataagatcatagttttcttccttgaacctctccacgccttccaccacaatttt |
33167778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 33168630 - 33168673
Alignment:
| Q |
141 |
tgcttcaattgatcaaatgcaccagctctaaatgtatctgcaca |
184 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33168630 |
tgcttcaattgatcaaatgcaccatctctaaatgtatctgcaca |
33168673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 33159293 - 33159336
Alignment:
| Q |
141 |
tgcttcaattgatcaaatgcaccagctctaaatgtatctgcaca |
184 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
33159293 |
tgcttcaattgatcaaatgcaccatctctaaatgcatctgcaca |
33159336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 33116847 - 33116888
Alignment:
| Q |
139 |
tctgcttcaattgatcaaatgcaccagctctaaatgtatctg |
180 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |
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| T |
33116847 |
tctgcttcaattgatcaaatgcaccatttctaagtgtatctg |
33116888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 33116017 - 33116080
Alignment:
| Q |
20 |
atcaacaattataagatcacagttttgttccttgaatctctccacaccttccacaacaattttga |
84 |
Q |
| |
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|||||||||||||||||||||| ||| |||||| |||| |||||||||| ||| ||||||||| |
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| T |
33116017 |
atcaacaattataagatcacag-tttcctccttgcatctgtccacacctttcacggcaattttga |
33116080 |
T |
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