View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_high_6 (Length: 494)
Name: NF11877_high_6
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 8437882 - 8437412
Alignment:
| Q |
1 |
gttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgagggacatggaagttgttcaggttcctacttttttgttcattagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437882 |
gttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgagggacatggaagttgttcaggttcctacttttttgttcattagag |
8437783 |
T |
|
| Q |
101 |
atggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaattctcaggtaccaaggagttcgtgttacttatt------aaat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8437782 |
atggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaattctcaggtaccaaggagttcgtgttacttattaaaatcaaat |
8437683 |
T |
|
| Q |
195 |
caaatcaattgcttgttcatgtttgtattgatcataaacnnnnnnnnnnnnnnnnnnnngttaaggatttgtctcactgatttcatttttcgaaagatat |
294 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437682 |
caaatcaattgcttgttcatgtgtgtattgatcataaacatatttttgtgagatatatagttaaggatttgtctcactgatttcatttttcgaaagatat |
8437583 |
T |
|
| Q |
295 |
atccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacacttcact |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437582 |
atccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacacttc--- |
8437486 |
T |
|
| Q |
395 |
aagttataactaatgtaaaaagttannnnnnngcttattatagtgtgtacatgtttatattttcattttgacaagatcaaact |
477 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437485 |
--------actaatgtaaaaagtta-ttttttgcttattatagtgtgtacatgtttatattttcattttgacaagatcaaact |
8437412 |
T |
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