View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11877_low_10 (Length: 482)

Name: NF11877_low_10
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11877_low_10
NF11877_low_10
[»] chr2 (5 HSPs)
chr2 (131-464)||(32632003-32632337)
chr2 (323-462)||(32613328-32613467)
chr2 (173-262)||(32613520-32613612)
chr2 (123-169)||(1831522-1831568)
chr2 (98-162)||(44325356-44325420)
[»] chr6 (6 HSPs)
chr6 (18-168)||(733489-733639)
chr6 (123-168)||(31650307-31650352)
chr6 (97-162)||(7952301-7952366)
chr6 (91-152)||(33817339-33817400)
chr6 (123-159)||(18361313-18361349)
chr6 (98-162)||(22015248-22015312)
[»] chr8 (8 HSPs)
chr8 (88-168)||(26762836-26762916)
chr8 (124-168)||(39560344-39560388)
chr8 (92-134)||(14179754-14179796)
chr8 (91-144)||(10325082-10325135)
chr8 (123-159)||(3017486-3017522)
chr8 (124-168)||(10744263-10744307)
chr8 (90-158)||(25467237-25467305)
chr8 (90-162)||(30011769-30011841)
[»] chr7 (3 HSPs)
chr7 (103-167)||(5376292-5376356)
chr7 (88-168)||(35169942-35170022)
chr7 (93-179)||(18577503-18577590)
[»] chr5 (5 HSPs)
chr5 (92-184)||(16230766-16230858)
chr5 (114-173)||(36261989-36262048)
chr5 (91-167)||(16962167-16962242)
chr5 (112-168)||(36639774-36639830)
chr5 (123-164)||(9906822-9906863)
[»] chr4 (2 HSPs)
chr4 (98-162)||(10997340-10997404)
chr4 (92-162)||(18966005-18966075)
[»] chr1 (4 HSPs)
chr1 (88-152)||(2160591-2160655)
chr1 (88-168)||(14303914-14303994)
chr1 (88-156)||(15867621-15867689)
chr1 (88-168)||(37287132-37287212)
[»] scaffold0029 (1 HSPs)
scaffold0029 (98-152)||(53834-53888)
[»] chr3 (2 HSPs)
chr3 (92-154)||(2101157-2101219)
chr3 (92-180)||(25764255-25764343)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 131 - 464
Target Start/End: Complemental strand, 32632337 - 32632003
Alignment:
Q  131 aaaacgtctgactttaatcataactacttctatagtcaaatatgtgatttgttgatagtgtaaaattttacgtttgagtatataaaaattaaactctaga 230  Q
    ||||||| ||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  32632337 aaaacgtttgattttaatcgtaacaacttctaaagtcaaatatgtgatttgttgatagtgtaaaattttatgtttgagtatataaaagttaaactctaga 32632238  T
Q  231 aaataatattatgacatatttacatagtaagatatgattagtgcataaatataaacatgtgatttttt-aactattaagggatttaaacagatagataga 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  32632237 aaataatattatgacatatttacatagtaagatatgattagtgcataaatataaacatgtgatttttttaactattaagggatttaaacaaagagataga 32632138  T
Q  330 atcaagagcaaaccagtcaaaacttgttttattcttcctgttgatgaacttgaggtatcagaagaatgtgagtcatttcgtaagctttgcttgccaacaa 429  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32632137 atcaaaagcaaaccagtcaaagcttgttttattcttcctgttgatgaatttgaggtatcagaagaatgagagtcatttcgtaagctttgcttgccaacaa 32632038  T
Q  430 taacacaggtcccccacacaactgtgagaagcaag 464  Q
    |||||||||||||||||||||||||||||||||||    
T  32632037 taacacaggtcccccacacaactgtgagaagcaag 32632003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 323 - 462
Target Start/End: Complemental strand, 32613467 - 32613328
Alignment:
Q  323 agatagaatcaagagcaaaccagtcaaaacttgttttattcttcctgttgatgaacttgaggtatcagaagaatgtgagtcatttcgtaagctttgcttg 422  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||  |||||||||||||||||| |||||||||   || |||||||||    
T  32613467 agatagaattaagagcaaaccagtcaaagcttgttttattcttccggttgataaatatgaggtatcagaagaatgagagtcatttttaaaactttgcttg 32613368  T
Q  423 ccaacaataacacaggtcccccacacaactgtgagaagca 462  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32613367 ccaacaataacacaggtcccccacacaactgtgagaagca 32613328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 32613612 - 32613520
Alignment:
Q  173 tgtgatttgttgatagtgtaaaattttacgtttga-gtatataaaaattaaactctagaaaata--atattatgacatatttacatagtaaga 262  Q
    ||||||||||| ||||| ||||||| ||| ||||| || |||||||||| ||||||| |||| |  || ||||||||||||||||||||||||    
T  32613612 tgtgatttgtttatagtataaaattctacatttgatgtgtataaaaattgaactctaaaaaaaagaatgttatgacatatttacatagtaaga 32613520  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 1831522 - 1831568
Alignment:
Q  123 gatcattaaaaacgtctgactttaatcataactacttctatagtcaa 169  Q
    ||||||||||||| ||||| || ||||||||||||||||| ||||||    
T  1831522 gatcattaaaaacatctgatttcaatcataactacttctaaagtcaa 1831568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 44325420 - 44325356
Alignment:
Q  98 cattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttcta 162  Q
    |||| ||||| |||||||||||||  ||||||||||| ||  ||||||||||||| ||| |||||    
T  44325420 cattatcaatcaatcataatcgttatatcattaaaaatgtaagactttaatcatatctatttcta 44325356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 733489 - 733639
Alignment:
Q  18 attatcagtcccttttttctcgcggccgggaagcattttaatgaggtagatgtccatataactgcagtttagattttttacattgtcaattaatcataat 117  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  733489 attatcagtccctttttcctcgcaaccgggaagcattttaatgaggtagatgtccatataactgcagtttagattttttacattgtcaaataatcataac 733588  T
Q  118 cgtttgatcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    |||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  733589 cgttagatcattaaaaacgtccgactttaatcgtaactacttctaaagtca 733639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 31650307 - 31650352
Alignment:
Q  123 gatcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    |||||||||||| || |||||||||||||||||||||||| |||||    
T  31650307 gatcattaaaaatgtttgactttaatcataactacttctaaagtca 31650352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 7952301 - 7952366
Alignment:
Q  97 acattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttcta 162  Q
    ||||||||||| |||||||| |||  ||||||||||||| | | ||||| |||||||| |||||||    
T  7952301 acattgtcaatcaatcataaccgtcggatcattaaaaacatttcacttttatcataacaacttcta 7952366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 33817400 - 33817339
Alignment:
Q  91 ttttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcata 152  Q
    ||||||||  ||||||| ||||||||||||| ||||||||||||    ||||||||||||||    
T  33817400 ttttttacgctgtcaatcaatcataatcgttagatcattaaaaatacatgactttaatcata 33817339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 18361349 - 18361313
Alignment:
Q  123 gatcattaaaaacgtctgactttaatcataactactt 159  Q
    ||||||||||||||| | |||||||||||||||||||    
T  18361349 gatcattaaaaacgtttaactttaatcataactactt 18361313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 22015312 - 22015248
Alignment:
Q  98 cattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttcta 162  Q
    |||| ||||| |||||||||||||  ||||||||||| ||  ||||||||||||| ||| |||||    
T  22015312 cattatcaatcaatcataatcgttatatcattaaaaatgtaagactttaatcatatctatttcta 22015248  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 26762836 - 26762916
Alignment:
Q  88 agattttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    ||||||| || ||||||||| |||||||||| |  ||||| ||||||||| ||||||||||||||| |||||||| |||||    
T  26762836 agattttctatattgtcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca 26762916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 39560388 - 39560344
Alignment:
Q  124 atcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    ||||||||||| || |||||||||||||||||||||||| |||||    
T  39560388 atcattaaaaatgtttgactttaatcataactacttctaaagtca 39560344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 14179754 - 14179796
Alignment:
Q  92 tttttacattgtcaattaatcataatcgtttgatcattaaaaa 134  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||    
T  14179754 tttttacattctcaatcaatcataattgtttgatcattaaaaa 14179796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 10325135 - 10325082
Alignment:
Q  91 ttttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactt 144  Q
    ||||||||||||| ||||||||||||||||| | ||||||| ||| | ||||||    
T  10325135 ttttttacattgttaattaatcataatcgttaggtcattaagaacatttgactt 10325082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 3017522 - 3017486
Alignment:
Q  123 gatcattaaaaacgtctgactttaatcataactactt 159  Q
    |||||||||||| || |||||||||||||||||||||    
T  3017522 gatcattaaaaaagtttgactttaatcataactactt 3017486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 10744263 - 10744307
Alignment:
Q  124 atcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||    
T  10744263 atcattaaaaacgtttgactttaattataactgcttctaaagtca 10744307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 25467237 - 25467305
Alignment:
Q  90 attttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactact 158  Q
    ||||||||||||||||||  ||||||| |||   ||||| ||||| || |||||| |||||||||||||    
T  25467237 attttttacattgtcaatccatcataaccgtcatatcataaaaaatgtttgacttaaatcataactact 25467305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 30011841 - 30011769
Alignment:
Q  90 attttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttcta 162  Q
    |||||||||| ||||||| ||||||| | ||   | ||||||||| || |||||| |||||||||||||||||    
T  30011841 attttttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttcta 30011769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 5376292 - 5376356
Alignment:
Q  103 tcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtc 167  Q
    ||||| |||||| |||||  ||||||||||||||| ||||| |||||||||||||||||| ||||    
T  5376292 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtc 5376356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 35169942 - 35170022
Alignment:
Q  88 agattttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    |||| ||||||| ||||||| |||  |||||||| ||| |||||| | || |||||||||||||||||||||||| |||||    
T  35169942 agatattttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtca 35170022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 18577590 - 18577503
Alignment:
Q  93 ttttacattgtcaattaatcataatcgtttgatcattaaaaac-gtctgactttaatcataactacttctatagtcaaatatgtgatt 179  Q
    |||||||||||||||||||  |||||  | ||||||||||||  || ||||||||| |||||||||||| | ||||| |||| |||||    
T  18577590 ttttacattgtcaattaattttaatcactggatcattaaaaaatgtttgactttaaacataactacttcgaaagtcacatatatgatt 18577503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 16230858 - 16230766
Alignment:
Q  92 tttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtcaaatatgtgatttgttg 184  Q
    |||||||| |||||||  ||| ||||||  |||||||| |||| || |||||||||||||||||||||||| | ||||| || ||||| ||||    
T  16230858 tttttacactgtcaatcgatcgtaatcgactgatcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttg 16230766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 36262048 - 36261989
Alignment:
Q  114 taatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtcaaatat 173  Q
    |||||||| ||||||||||||| | || ||||||||||||||||||||| ||||| ||||    
T  36262048 taatcgttggatcattaaaaacatttggctttaatcataactacttctaaagtcacatat 36261989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 16962167 - 16962242
Alignment:
Q  91 ttttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtc 167  Q
    ||||||||| |||| || ||||||| | ||| ||||||||||| ||| |||||||||||||||||| ||||| ||||    
T  16962167 ttttttacactgtcgatcaatcatagttgttagatcattaaaa-cgtttgactttaatcataactatttctaaagtc 16962242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 36639830 - 36639774
Alignment:
Q  112 cataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    ||||||| |||||||||||| ||||| | | |||||||||||||||||||| |||||    
T  36639830 cataatcttttgatcattaagaacgtttcaatttaatcataactacttctaaagtca 36639774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 9906863 - 9906822
Alignment:
Q  123 gatcattaaaaacgtctgactttaatcataactacttctata 164  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||    
T  9906863 gatcattaaaagcgtctgacttttatcataactacttttata 9906822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 10997404 - 10997340
Alignment:
Q  98 cattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttcta 162  Q
    |||| ||||| |||||||||||||  ||||||||||||||  ||||||||||||| ||| |||||    
T  10997404 cattatcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctatttcta 10997340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 18966075 - 18966005
Alignment:
Q  92 tttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttcta 162  Q
    |||||||||||| |||  |||||||||||   ||||||||||| || ||||||||||| |||||| |||||    
T  18966075 tttttacattgttaatcgatcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaattcta 18966005  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 2160591 - 2160655
Alignment:
Q  88 agattttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcata 152  Q
    |||| ||||||||||||||| | |||||| ||||  |||||||||||||  ||||||||||||||    
T  2160591 agatattttacattgtcaatcagtcataaacgttaaatcattaaaaacgcttgactttaatcata 2160655  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 14303914 - 14303994
Alignment:
Q  88 agattttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtca 168  Q
    |||||||||||| ||||||| |||||  |||||  |||| ||| ||| || ||||||||||||||||||||| || |||||    
T  14303914 agattttttacactgtcaatcaatcagcatcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtca 14303994  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 15867689 - 15867621
Alignment:
Q  88 agattttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataacta 156  Q
    ||||||||||||  |||||| ||||||||||||   ||||||||||  || ||||||||||||||||||    
T  15867689 agattttttacaacgtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 37287212 - 37287132
Alignment:
Q  88 agattttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgacttt-aatcataactacttctatagtca 168  Q
    ||||||||||||  ||||||| |||||||||||| |||||  |||||||  ||||||| |||||||||||||| || |||||    
T  37287212 agattttttacacagtcaattgatcataatcgttagatca-aaaaaacgcttgactttcaatcataactacttgtaaagtca 37287132  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 53834 - 53888
Alignment:
Q  98 cattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcata 152  Q
    |||| ||||| |||||||||||||  ||||||||||||||  |||||||||||||    
T  53834 cattatcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcata 53888  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 2101157 - 2101219
Alignment:
Q  92 tttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataac 154  Q
    |||||||||||| ||| |||||||| |||| |||||||| |||| | ||||||| ||||||||    
T  2101157 tttttacattgttaatcaatcataaccgttagatcattagaaacatttgacttttatcataac 2101219  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 25764255 - 25764343
Alignment:
Q  92 tttttacattgtcaattaatcataatcgtttgatcattaaaaacgtctgactttaatcataactacttctatagtcaaatatgtgattt 180  Q
    |||||||||||||||| |||| || | |||  |||||||||||  | || ||||||||||| ||||| ||| ||||| |||| ||||||    
T  25764255 tttttacattgtcaatgaatcctatttgttacatcattaaaaatatttgtctttaatcatatctactactaaagtcacatatatgattt 25764343  T

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