View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11877_low_13 (Length: 435)

Name: NF11877_low_13
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11877_low_13
NF11877_low_13
[»] chr2 (4 HSPs)
chr2 (27-423)||(40018098-40018494)
chr2 (303-423)||(13710190-13710309)
chr2 (303-420)||(31528513-31528629)
chr2 (307-420)||(31626673-31626784)
[»] chr7 (8 HSPs)
chr7 (297-420)||(11279614-11279736)
chr7 (297-423)||(294980-295106)
chr7 (65-293)||(22796405-22796642)
chr7 (296-420)||(36222308-36222431)
chr7 (303-420)||(23759615-23759730)
chr7 (305-420)||(46846320-46846434)
chr7 (303-420)||(33313118-33313233)
chr7 (303-413)||(3861913-3862022)
[»] chr6 (4 HSPs)
chr6 (65-294)||(15870354-15870592)
chr6 (303-420)||(13017195-13017311)
chr6 (305-410)||(22221854-22221959)
chr6 (305-410)||(22247689-22247794)
[»] chr5 (7 HSPs)
chr5 (305-420)||(33575212-33575326)
chr5 (303-420)||(15532206-15532322)
chr5 (303-420)||(15542388-15542504)
chr5 (303-401)||(26711470-26711567)
chr5 (303-401)||(26981207-26981304)
chr5 (303-408)||(22159881-22159986)
chr5 (303-351)||(11988868-11988916)
[»] chr3 (5 HSPs)
chr3 (303-420)||(11138576-11138692)
chr3 (303-420)||(22626318-22626434)
chr3 (303-419)||(39563516-39563631)
chr3 (365-406)||(20536404-20536445)
chr3 (367-414)||(35366503-35366549)
[»] chr4 (2 HSPs)
chr4 (303-420)||(12172095-12172212)
chr4 (303-413)||(2542012-2542122)
[»] scaffold0440 (1 HSPs)
scaffold0440 (305-420)||(9986-10101)
[»] chr8 (1 HSPs)
chr8 (297-413)||(12575300-12575416)
[»] scaffold0264 (1 HSPs)
scaffold0264 (305-410)||(24193-24298)
[»] chr1 (1 HSPs)
chr1 (303-413)||(1936758-1936868)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 27 - 423
Target Start/End: Complemental strand, 40018494 - 40018098
Alignment:
Q  27 ttaagtcaggcagtgcttaattaatgctatttgacatattgttttcaatttattgttgattcgtgatgtgtgattattatgtatgctccttgttgcagct 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40018494 ttaagtcaggcagtgcttaattaatgctatttgacatattgttttcaatttattgttgattcgtgatgtgtgattattatgtatgttccttgttgcagct 40018395  T
Q  127 gaactgttctttgacaaatctctccgcaccaagctatgcaacaatatgtttctttctgtactgtatcagtcattcttcaaccttgatttgatgttttgta 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  40018394 gaactgttctttgacaaatctctccgcaccaagctatgcaacaatatgtttgtttctgtactgtatcagtcattcttcaaccttgaattgatgttttgta 40018295  T
Q  227 atgcaggtaccgctcctctatcgtacgtggagttccaacaaacaaggaagaactactcaatggcaaagagtgatgaatatttggcaagtgaaccaaattc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40018294 atgcaggtaccgctcctctatcgtacgtggagttccaacaaacaaggaagaactactcaatggtaaagagtgatgaatatttggcaagtgaaccaaattc 40018195  T
Q  327 aattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatgtataaaatttatattgatg 423  Q
    ||| |||||||||||||||| ||||||||||||| ||||||||||||  |||| |||||||  ||||||||||||||||||||||||||||||||||    
T  40018194 aatcgaagtaataaaaaatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttattaaaaaggatgtataaaatttatattgatg 40018098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 303 - 423
Target Start/End: Complemental strand, 13710309 - 13710190
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| || || | || ||||||||| ||||||||||||||||||||||||||||    
T  13710309 atatttggcaagtgaaccaaattcaatcgaagtaataaaaa-ttcgtttttacgagaactgtatttaacttctacttagcaatttcattattaaaaagga 13710211  T
Q  403 tgtataaaatttatattgatg 423  Q
    |||||||||||||||||||||    
T  13710210 tgtataaaatttatattgatg 13710190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 420
Target Start/End: Complemental strand, 31528629 - 31528513
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||| ||| |||| || ||||||||| ||||||||||||||||||||||||||||    
T  31528629 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 31528530  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  31528529 tgtat-aaatttatattg 31528513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 420
Target Start/End: Complemental strand, 31626784 - 31626673
Alignment:
Q  307 ttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatgta 406  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||  |  |||| || | ||||||| |||||||||||||||||||||||||||||||     
T  31626784 ttggtaagtgaaccaaattcaatcgaagtaata-aaaattcgtttcaatgaggactgta-ttaacttctacttagcaatttcattattaaaaaggatgtg 31626687  T
Q  407 taaaatttatattg 420  Q
    ||||||||||||||    
T  31626686 taaaatttatattg 31626673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 11279736 - 11279614
Alignment:
Q  297 tgatgaatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaa 396  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||| |  |||||| || ||||||||||||||||||||||    
T  11279736 tgatgaatatttggcaagtgaaccaaattcaatcgaagtaataaaaattt-gtttccacaaggactatatttaatttctacttagcaatttcattattaa 11279638  T
Q  397 aaaggatgtataaaatttatattg 420  Q
    ||||||||||||||||||||||||    
T  11279637 aaaggatgtataaaatttatattg 11279614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 297 - 423
Target Start/End: Complemental strand, 295106 - 294980
Alignment:
Q  297 tgatgaatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaa 396  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| || | ||| |||| || ||||||||| ||||||||||||||||||||||    
T  295106 tgatggatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgtgtccacgaggactgtatttaacttctacttagcaatttcattattaa 295007  T
Q  397 aaaggatgtataaaatttatattgatg 423  Q
    ||||||||||  |||||||||||||||    
T  295006 aaaggatgtaataaatttatattgatg 294980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 22796405 - 22796642
Alignment:
Q  65 ttgttttcaatttattgttgattcgtgatgtgtgattattatgtatgctccttgttgcagctgaactgttctttgacaaatctctccgcaccaagctatg 164  Q
    ||||||||||||||||| ||||| |||||| ||| |||||||| |||||||| |||||||||||||  |||||||||||| |||||||||||||||||||    
T  22796405 ttgttttcaatttattgctgatttgtgatgagtgcttattatgcatgctcct-gttgcagctgaacctttctttgacaaagctctccgcaccaagctatg 22796503  T
Q  165 caacaatatgtttctttct---gtactgtatcagtcattcttcaaccttgatttgatgtt-------ttgtaatgcaggtaccgctcctctatcgtacgt 254  Q
    | |   ||  |||||||||   ||||||||||||||||||||  ||| ||  ||||||||       |||||||| ||| || ||| |||| ||||| |     
T  22796504 cgatggtaactttctttctgtggtactgtatcagtcattctttgaccgtggattgatgttttgtaaattgtaatgtaggcactgctgctctttcgtatgc 22796603  T
Q  255 ggagttccaacaaacaaggaagaactactcaatggcaaa 293  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  22796604 ggagttccaacaaactaggcagaactactcaatggcaaa 22796642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 36222308 - 36222431
Alignment:
Q  296 gtgatgaatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattatta 395  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| |||||||  ||| |||| || |||||| || ||| |||||||||||||||||    
T  36222308 gtgatggatatttggcaaatgaaccaaattcaattgaagtaataaaa-attcgttaccacgaggattgtatttaatttctacgtagcaatttcattatta 36222406  T
Q  396 aaaaggatgtataaaatttatattg 420  Q
    |||||||||||||||||||||||||    
T  36222407 aaaaggatgtataaaatttatattg 36222431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 23759615 - 23759730
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||  || |||| || ||||||||| |||||||||| |||||| ||||||||||    
T  23759615 atatttggcaagtgaaccaaattcaatcgaagtaataaaaagttcgtttctacgaggactgtatttaacttctacttagcaaattcatt-ttaaaaagga 23759713  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  23759714 tgtat-aaatttatattg 23759730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 305 - 420
Target Start/End: Original strand, 46846320 - 46846434
Alignment:
Q  305 atttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatg 404  Q
    |||||||||||||| || ||||||| |||||||||||||  | |||| ||| |||| || |||||| || ||||||||||||||||||||||||||||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaaaatat-gtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggatg 46846418  T
Q  405 tataaaatttatattg 420  Q
    ||||||||||||||||    
T  46846419 tataaaatttatattg 46846434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 303 - 420
Target Start/End: Complemental strand, 33313233 - 33313118
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||  ||||||| |||||||||| ||||||||||||| |||||||  || |||| || ||| ||||| ||||||||||||||||||||||||||||    
T  33313233 atatttgagaagtgaaacaaattcaatcgaagtaataaaaa-ttcgtttctacgaggactgtatt-aacttctacttagcaatttcattattaaaaagga 33313136  T
Q  403 tgtataaaatttatattg 420  Q
    ||| ||||||||||||||    
T  33313135 tgtgtaaaatttatattg 33313118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 413
Target Start/End: Original strand, 3861913 - 3862022
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||| || | | ||||| ||||||||||| |||| || | ||| |||| ||   ||||||| |||||||||||||||||||| |||||||    
T  3861913 atatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacgaggattgttattaacttctacttagcaatttcattatt-aaaagga 3862011  T
Q  403 tgtataaaatt 413  Q
    ||||| |||||    
T  3862012 tgtattaaatt 3862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 65 - 294
Target Start/End: Complemental strand, 15870592 - 15870354
Alignment:
Q  65 ttgttttcaatttattgttgattcgtgatgtgtgattattatgtatgctccttgttgcagctgaactgttctttgacaaatctctccgcaccaagctatg 164  Q
    ||||||||||||||||| ||||| |||||| ||| ||||||||| ||||||| |||||||||||||  |||||| |||||||||||||||||||||||||    
T  15870592 ttgttttcaatttattgctgatttgtgatgagtgcttattatgtgtgctcct-gttgcagctgaacctttctttaacaaatctctccgcaccaagctatg 15870494  T
Q  165 caacaatatgtttctttct---gtactgtatcagtcattcttcaaccttgatttgatgtt-------ttgtaatgcaggtaccgctcctctatcgtacgt 254  Q
    | |   ||  |||||||||   ||||| ||||||||||||||| | | ||  ||||||||       |||||||| ||| || ||| |||||||||| |     
T  15870493 ctatggtaactttctttctgtggtactctatcagtcattcttcgatcgtggattgatgttctgtaaattgtaatgtaggcactgctgctctatcgtatgc 15870394  T
Q  255 ggagttccaacaaacaaggaagaactactcaatggcaaag 294  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  15870393 ggagttccaacaaactaggcagaactactcaatggcaaag 15870354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 13017195 - 13017311
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||| ||| |||| |  ||||||||| ||||||||||||||||||||||||||||    
T  13017195 atatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaaaaagga 13017294  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  13017295 tgtat-aaatttatattg 13017311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 22221959 - 22221854
Alignment:
Q  305 atttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatg 404  Q
    |||||||||||| ||||||  | || |||||| ||| |||||||||| ||| |||| |  ||||| ||| |||| |||||||||||||||||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22221860  T
Q  405 tataaa 410  Q
    ||||||    
T  22221859 tataaa 22221854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 22247794 - 22247689
Alignment:
Q  305 atttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatg 404  Q
    |||||||||||| ||||||  | || |||||| ||| |||||||||| ||| |||| |  ||||| ||| |||| |||||||||||||||||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22247695  T
Q  405 tataaa 410  Q
    ||||||    
T  22247694 tataaa 22247689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 305 - 420
Target Start/End: Complemental strand, 33575326 - 33575212
Alignment:
Q  305 atttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatg 404  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||||| || |||||||||| ||||||||||||||||    
T  33575326 atttggcaagtgaaccaaattcaatcgaagtaataaaaaattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaaaggatg 33575227  T
Q  405 tataaaatttatattg 420  Q
    ||| ||||||||||||    
T  33575226 tat-aaatttatattg 33575212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 15532206 - 15532322
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||| ||||||||||||| || ||||||||||||||||||||| ||| |||| || ||||||||| ||||||||||||||||||||||||||||    
T  15532206 atatttggcatgtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 15532305  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  15532306 tgtat-aaatttatattg 15532322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 15542388 - 15542504
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||| || ||||||||| |||||| |||||||||||||||||||||    
T  15542388 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaaagga 15542487  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  15542488 tgtat-aaatttatattg 15542504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 26711470 - 26711567
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || | ||||||| ||||||||||||||||||| |||||||    
T  26711470 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaaaaagg 26711567  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 26981207 - 26981304
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || | ||||||| ||||||||||||||||||| |||||||    
T  26981207 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaaaaagg 26981304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 22159986 - 22159881
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    ||||||| |||||| ||||||||| || |||||||||||||||| |||| ||| |||| || ||||||||| |||||||||||||| || | ||||||||    
T  22159986 atatttgacaagtgtaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtcaaaaagga 22159887  T
Q  403 tgtata 408  Q
    ||||||    
T  22159886 tgtata 22159881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 11988868 - 11988916
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttt 351  Q
    ||||||| |||||||| |||||||||| ||||||||||| |||||||||    
T  11988868 atatttgacaagtgaatcaaattcaatcgaagtaataaataattcgttt 11988916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 11138576 - 11138692
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||| ||| |||| || ||||||||| ||||||||||||||||||||||||||||    
T  11138576 atatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 11138675  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  11138676 tgtat-aaatttatattg 11138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 420
Target Start/End: Original strand, 22626318 - 22626434
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||| ||| |||| || ||||||||| ||||||||||||||||||||||||||||    
T  22626318 atatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 22626417  T
Q  403 tgtataaaatttatattg 420  Q
    ||||| ||||||||||||    
T  22626418 tgtat-aaatttatattg 22626434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 39563516 - 39563631
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||| || | ||||||| ||||||||||||||||||| ||||||||    
T  39563516 atatttggcaagtgaaccaaattcaatcaaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattataaaaaagga 39563614  T
Q  403 tgtataaaatttatatt 419  Q
    ||| |||||||||||||    
T  39563615 tgtgtaaaatttatatt 39563631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 20536404 - 20536445
Alignment:
Q  365 atttaacttttacttagcaatttcattattaaaaaggatgta 406  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  20536404 atttaacttctacttagaaatttcattattaaaaaggatgta 20536445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Complemental strand, 35366549 - 35366503
Alignment:
Q  367 ttaacttttacttagcaatttcattattaaaaaggatgtataaaattt 414  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  35366549 ttaacttctacttagcaatttcatta-taaaaaggatgtattaaattt 35366503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 303 - 420
Target Start/End: Complemental strand, 12172212 - 12172095
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaat-tcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagg 401  Q
    |||||||||||||||||||||||| || ||||||||||||||  |||||| ||| |||| || ||||||||| |||||||||||||||||||||||||||    
T  12172212 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 12172113  T
Q  402 atgtataaaatttatattg 420  Q
    |||||| ||||||||||||    
T  12172112 atgtat-aaatttatattg 12172095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 413
Target Start/End: Complemental strand, 2542122 - 2542012
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    |||||||||||||| |||||| ||||| ||||||||||| ||||||| | ||| |||| || ||||||||| |||| |||||||||||||||||||||||    
T  2542122 atatttggcaagtgtaccaaagtcaatcgaagtaataaataattcgtatccacgaggactgtatttaacttctactgagcaatttcattattaaaaagga 2542023  T
Q  403 tgtataaaatt 413  Q
    ||||| |||||    
T  2542022 tgtattaaatt 2542012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 420
Target Start/End: Complemental strand, 10101 - 9986
Alignment:
Q  305 atttggcaagtgaaccaaattcaattgaagtaataaaa-aattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggat 403  Q
    |||||||||||||| ||||||| || |||||||||||| ||||||||| | || ||| || ||||||||| |||||||||||||||||||||||||||||    
T  10101 atttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattattaaaaaggat 10002  T
Q  404 gtataaaatttatattg 420  Q
    |||| ||||||||||||    
T  10001 gtat-aaatttatattg 9986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 413
Target Start/End: Original strand, 12575300 - 12575416
Alignment:
Q  297 tgatgaatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaa 396  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||| ||||||| | ||| |||| ||   ||||||| |||| | ||| |||||||||||    
T  12575300 tgataaatatttggcaagtgtaccaaattcaatcgaagtaataaataattcgtatccacgaggactgttgttaacttctactcaacaagttcattattaa 12575399  T
Q  397 aaaggatgtataaaatt 413  Q
    ||||||||||| |||||    
T  12575400 aaaggatgtattaaatt 12575416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 24193 - 24298
Alignment:
Q  305 atttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaaggatg 404  Q
    |||||||||||| ||||||  | || |||||| ||| ||||| |||| ||| |||| || ||||||||| |||| | |||||||||||||||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaatttgtttccacgaggactgtatttaacttctactcaacaatttcattattaaaaaggatg 24292  T
Q  405 tataaa 410  Q
    ||||||    
T  24293 tataaa 24298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 413
Target Start/End: Complemental strand, 1936868 - 1936758
Alignment:
Q  303 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgttttcacaaggaatgcatttaacttttacttagcaatttcattattaaaaagga 402  Q
    ||||||||||||||||||||||||||| |||||||| || ||||| ||| ||||| ||      ||||||| ||||| |||||||||||| ||| || ||    
T  1936868 atatttggcaagtgaaccaaattcaatcgaagtaatgaataattcatttccacaatgaccattgttaacttctacttggcaatttcattagtaataacga 1936769  T
Q  403 tgtataaaatt 413  Q
    ||||| |||||    
T  1936768 tgtattaaatt 1936758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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