View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_14 (Length: 384)
Name: NF11877_low_14
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 5592660 - 5593018
Alignment:
| Q |
19 |
ctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592660 |
ctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaa |
5592759 |
T |
|
| Q |
119 |
gcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagcta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592760 |
gcatttgttaaggtattcttgagctttgtcaattcctccaagttggctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagcta |
5592859 |
T |
|
| Q |
219 |
atagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaacct |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592860 |
atagcataaccctgtacggacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaacct |
5592959 |
T |
|
| Q |
319 |
tagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592960 |
tagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
5593018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 5572923 - 5573281
Alignment:
| Q |
19 |
ctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaa |
118 |
Q |
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|||||||||||||||||||||||| || |||| | | || |||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| |
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| T |
5572923 |
ctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaattgtttatgtaatcgttacttccaatattcacataatacaa |
5573022 |
T |
|
| Q |
119 |
gcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagcta |
218 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573023 |
gcatttgttaaggtattgttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagcta |
5573122 |
T |
|
| Q |
219 |
atagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaacct |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573123 |
atagcataaccctgtacggacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaacct |
5573222 |
T |
|
| Q |
319 |
tagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
377 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5573223 |
tagctgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
5573281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 5575954 - 5576246
Alignment:
| Q |
19 |
ctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaa |
118 |
Q |
| |
|
||||||| |||||||||||||||| | |||| | | || ||||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
5575954 |
ctgcatattgctcagggctataaatttgacttgttgggtagaattgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaa |
5576053 |
T |
|
| Q |
119 |
gcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagcta |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||| || |
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| T |
5576054 |
gcatttgctaaggtattcttgagctttgtcaataccttcaagtctgctagcaattcgagaaactataactttgtgattttctaactgtaatcccaaactg |
5576153 |
T |
|
| Q |
219 |
atagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatt |
311 |
Q |
| |
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||| || ||||||| || | ||||||||||||| | ||||| |||||||| ||||| |||||||||| | | ||||||||||| |||||||| |
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| T |
5576154 |
ataacaaaaccctgcacagaaataatgttattttggtggcatatgtatgagcaatgtgacaaaaatacacaagtcatctactaataactaatt |
5576246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 5586434 - 5586629
Alignment:
| Q |
19 |
ctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaa |
118 |
Q |
| |
|
|||| ||||||| ||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5586434 |
ctgcgtactgctgagggctataaatgtgtcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataa |
5586533 |
T |
|
| Q |
119 |
gcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaa |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||| || | ||||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
5586534 |
gcatttattaaggtattcttgagctttgttaagacttccaagtctgctagcaatttgagaaattataactttgtgattttttaactgtaatcccaa |
5586629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 311
Target Start/End: Original strand, 5582176 - 5582376
Alignment:
| Q |
111 |
taatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatc |
210 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
5582176 |
taatacaagcatttgttaaggtattgttcagaactgtcaatacctccaagtctgctagcaatttgagaaactattactttgtgattctttaactgtaatc |
5582275 |
T |
|
| Q |
211 |
ccaagctaatagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaat |
310 |
Q |
| |
|
||||||| ||| || |||||||||| || |||||||||||| | | ||||| ||| || | ||||||||||||| |||| || |||||||||||||||| |
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|
| T |
5582276 |
ccaagctgataacagaaccctgtacagacgtaatgttattttggtgacatgtatataagcagtgtaacaaaaatattctagtcctctactaaaaactaat |
5582375 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
5582376 |
t |
5582376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 12052563 - 12052456
Alignment:
| Q |
108 |
acataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgta |
207 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| ||| |||| | ||||||| | ||||||||| ||||||||||| || ||||||| | ||||||| |
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|
| T |
12052563 |
acataacacaaacatttgttaaggtattgctgagttttttcaagacttccaagtctagtagcaatttcagaaactataagtcggtgatttgtcaactgta |
12052464 |
T |
|
| Q |
208 |
atcccaag |
215 |
Q |
| |
|
|| ||||| |
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|
| T |
12052463 |
ataccaag |
12052456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 5586717 - 5586782
Alignment:
| Q |
312 |
taaaccttagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
377 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
5586717 |
taaaccttagccatgcttgtctcggtacgaattccagctgcgccagatgcgtagttcacacctttg |
5586782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 5576313 - 5576361
Alignment:
| Q |
329 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
377 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||||| ||||||||| |
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|
| T |
5576313 |
tgtctcgatacgaattccagctgcaccagatgcatagttaacacctttg |
5576361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 5582483 - 5582529
Alignment:
| Q |
329 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctt |
375 |
Q |
| |
|
|||||| | ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
5582483 |
tgtctcgacacgaattccagctccacgagatgcatagttcacacctt |
5582529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 5613506 - 5613546
Alignment:
| Q |
81 |
tttatgtaatcattactgccaatatgcacataatacaagca |
121 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||| |
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|
| T |
5613506 |
tttatgtaatcgttgctgccaatattcacataatacaagca |
5613546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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