View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_17 (Length: 341)
Name: NF11877_low_17
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 40807659 - 40807379
Alignment:
| Q |
14 |
agagggaaactagagataagctgaaaactaagtcttcaattgtttaaaaatgatatttcctctgttacaaaatgtaattaagtgactcaaagaaatttga |
113 |
Q |
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| T |
40807659 |
agagggaaactagagataagctgaaaactaagtcttcaactgtttaaaaatggtatttcctctgttagaaaatgtaattaagtgagtcaaagaaatttga |
40807560 |
T |
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| Q |
114 |
catattcagatcaaattttaaaccaaatgcattatttatattttataaataatgcattattgaagcaaaacaggttagtcagctggcagttgcatgatat |
213 |
Q |
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| T |
40807559 |
catatttagatcaa--------------------tttatattttataaataatgcattattgaaacaaaacaggttagtcagctggcagttgcatgatat |
40807480 |
T |
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| Q |
214 |
tggagttattacctcttaacttttaagtgcatgaaatggaagtaatgatactaacaatataatagcgcttttactttttctgaaacaaattgtctattac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40807479 |
tggagttattacctcttaacttttaagtgcatgaaatggaagtaatgatactaacaatataatagcgcttttactttttctgaaacaaattgtctattac |
40807380 |
T |
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