View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_18 (Length: 307)
Name: NF11877_low_18
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 30502101 - 30501826
Alignment:
| Q |
16 |
agaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgaccttgtgaaggttctgttctcatacaaatctataattga |
115 |
Q |
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| T |
30502101 |
agaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgaccttgtgaaggttctgttctcatacaaatctataattga |
30502002 |
T |
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| Q |
116 |
ttcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaagttgtatctcgattctcgatgctagatgctagttgtatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30502001 |
ttcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaagttgtatctcgattctcgatgctaggtgctagttgtatc |
30501902 |
T |
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| Q |
216 |
ccgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagatccaattctcaattt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30501901 |
tcgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagatccaattctcaattt |
30501826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 30542444 - 30542169
Alignment:
| Q |
16 |
agaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgaccttgtgaaggttctgttctcatacaaatctataattga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542444 |
agaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgaccttgtgaaggttctgttctcatacaaatctataattga |
30542345 |
T |
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| Q |
116 |
ttcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaagttgtatctcgattctcgatgctagatgctagttgtatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30542344 |
ttcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaagttgtatctcgattctcgatgctaggtgctagttgtatc |
30542245 |
T |
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| Q |
216 |
ccgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagatccaattctcaattt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542244 |
tcgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagatccaattctcaattt |
30542169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 26027212 - 26027284
Alignment:
| Q |
16 |
agaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgaccttgtgaaggt |
88 |
Q |
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|||| ||||| | ||| |||||||||||||| ||||| ||||||| ||| |||||||| |||||||||||||| |
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| T |
26027212 |
agaatcttttggaaaattggctagcagaggacaaactggaatgcagtgaggagcttggcgaccttgtgaaggt |
26027284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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