View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11877_low_2 (Length: 708)

Name: NF11877_low_2
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11877_low_2
NF11877_low_2
[»] chr3 (4 HSPs)
chr3 (18-702)||(42084452-42085140)
chr3 (625-689)||(21127742-21127807)
chr3 (625-689)||(43291871-43291936)
chr3 (617-697)||(34935729-34935809)
[»] chr5 (4 HSPs)
chr5 (615-697)||(40579682-40579764)
chr5 (617-697)||(12974252-12974332)
chr5 (644-697)||(38274991-38275044)
chr5 (625-689)||(17537469-17537537)
[»] chr8 (1 HSPs)
chr8 (616-697)||(33802582-33802663)
[»] chr7 (10 HSPs)
chr7 (617-698)||(42617403-42617484)
chr7 (625-689)||(28545504-28545569)
chr7 (625-689)||(28549919-28549984)
chr7 (625-689)||(28556087-28556152)
chr7 (625-689)||(47958511-47958576)
chr7 (625-689)||(48253863-48253928)
chr7 (625-689)||(24142897-24142962)
chr7 (625-678)||(36977679-36977732)
chr7 (626-689)||(2415883-2415947)
chr7 (625-670)||(46961385-46961430)
[»] chr1 (6 HSPs)
chr1 (616-697)||(47490277-47490358)
chr1 (617-697)||(25948201-25948281)
chr1 (614-697)||(5298752-5298835)
chr1 (625-689)||(2736182-2736247)
chr1 (625-689)||(39959850-39959915)
chr1 (625-689)||(1076197-1076262)
[»] scaffold0648 (1 HSPs)
scaffold0648 (617-697)||(7745-7825)
[»] chr4 (7 HSPs)
chr4 (617-697)||(43930110-43930190)
chr4 (625-689)||(33075804-33075869)
chr4 (626-689)||(55899070-55899134)
chr4 (625-689)||(228867-228935)
chr4 (625-689)||(240412-240480)
chr4 (629-679)||(42678844-42678894)
chr4 (625-689)||(47819298-47819366)
[»] chr2 (1 HSPs)
chr2 (625-689)||(36011894-36011959)
[»] chr6 (1 HSPs)
chr6 (626-689)||(30809870-30809934)


Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 18 - 702
Target Start/End: Original strand, 42084452 - 42085140
Alignment:
Q  18 ccatatcatcatctcttccccttccatcacactcatatttacattgatataaaggcacatgcatctagcatagttcagttaaattataccaaattaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42084452 ccatatcatcatctcttccccttccatcacactcatatttacattgatataaaggcacatgcatctagcatagttcagttaaattataccaaattaaagg 42084551  T
Q  118 aaaagtgtgatgaacaaacctcgaaaatctcgaatgaacttcccaagaagtttctcactctgaccattaaaccttccagtaccataagaatcagcagtat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42084552 aaaagtgtgatgaacaaacctcgaaaatctcgaatgaacttcccaagaagtttctcactctgaccattaaaccttccagtaccataagaatcagcagtat 42084651  T
Q  218 caaaaagattaacaccattctcaacagccatgttaaacacttgttgtaggtcatcatccatggattcttgatacccccaaagaagctgattaccccatgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42084652 caaaaagattaacaccattctcaacagccatgttaaacacttgctgtaggtcatcatccatggattcttgatacccccaaagaagctgattaccccatgc 42084751  T
Q  318 ccaagttccaaaacccattggagacacacttagaggccccatcttgagcttttgtttttgggtggatggccatagggaagggaatttgaaaggaaaagat 417  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  42084752 ccaagttccaaaacccattggagaaacacttagaggccccatcttgagcttttggttttgggtggatggccatagggaagggaatttgaaagtaaaagat 42084851  T
Q  418 ggtaaagggttgttaatgtttgaggaaccaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttgg 517  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42084852 ggtaaagggttgttaatgtttgaggaacaaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttgg 42084951  T
Q  518 tagttaattcgttgtgtggtggtaactaactgttatggatcagttttgtcgatt----aagaaaatagtttaatattatgaataagaaaatgnnnnnnnt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||       |    
T  42084952 tagttaattcgttgtgtggtggtaactaactgttatggatcagttttgtcgattaagaaagaaaatagtttaatattatgaataagaaaatgaaaaaaat 42085051  T
Q  614 aattgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctctgct 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42085052 aattgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgct 42085140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Original strand, 21127742 - 21127807
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  21127742 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 21127807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Original strand, 43291871 - 43291936
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  43291871 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 43291936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 617 - 697
Target Start/End: Complemental strand, 34935809 - 34935729
Alignment:
Q  617 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||| |||||| |||||||||||||||||||||  ||| |||||||||||||  ||||||||||||| |||||||| ||||    
T  34935809 tgacggctgtgagatttgaacccacgccctttcaaaccggagcctaaatctgatgccttagaccacttggccaaaccgtct 34935729  T

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Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 615 - 697
Target Start/End: Complemental strand, 40579764 - 40579682
Alignment:
Q  615 attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40579764 attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 40579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 617 - 697
Target Start/End: Complemental strand, 12974332 - 12974252
Alignment:
Q  617 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12974332 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 12974252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 644 - 697
Target Start/End: Original strand, 38274991 - 38275044
Alignment:
Q  644 cctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38274991 cctttcggaccagagcctaaatctggcgccgtagaccactcggccaaactgtct 38275044  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 17537537 - 17537469
Alignment:
Q  625 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 689  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
T  17537537 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 17537469  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 616 - 697
Target Start/End: Original strand, 33802582 - 33802663
Alignment:
Q  616 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33802582 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 33802663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 617 - 698
Target Start/End: Original strand, 42617403 - 42617484
Alignment:
Q  617 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctc 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42617403 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctc 42617484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 28545569 - 28545504
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  28545569 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28545504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 28549984 - 28549919
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  28549984 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28549919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 28556152 - 28556087
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  28556152 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28556087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Original strand, 47958511 - 47958576
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  47958511 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 47958576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 48253928 - 48253863
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  48253928 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 48253863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 625 - 689
Target Start/End: Original strand, 24142897 - 24142962
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||| |||||||||    
T  24142897 gtgggatttgaacccacaccctatcggaccagaaccttaatctggcgccttagaccaactcggcca 24142962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 678
Target Start/End: Original strand, 36977679 - 36977732
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttaga 678  Q
    |||||||||||||||| |||||||| | |||||||||||||||  |||||||||    
T  36977679 gtgggatttgaacccatgccctttcaggccagagcctaaatctaacgccttaga 36977732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 689
Target Start/End: Complemental strand, 2415947 - 2415883
Alignment:
Q  626 tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||||||    
T  2415947 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 2415883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 670
Target Start/End: Complemental strand, 46961430 - 46961385
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggc 670  Q
    |||||||||||||||||||| |||| ||||||| ||| ||||||||    
T  46961430 gtgggatttgaacccacgccttttcagaccagaaccttaatctggc 46961385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 616 - 697
Target Start/End: Original strand, 47490277 - 47490358
Alignment:
Q  616 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47490277 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 47490358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 617 - 697
Target Start/End: Complemental strand, 25948281 - 25948201
Alignment:
Q  617 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25948281 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 25948201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 614 - 697
Target Start/End: Complemental strand, 5298835 - 5298752
Alignment:
Q  614 aattgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5298835 aattgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtct 5298752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 2736247 - 2736182
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  2736247 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 2736182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 39959915 - 39959850
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  39959915 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 39959850  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 1076262 - 1076197
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||    
T  1076262 gtgggatttgaacccacgccctttcggaccagaaccttaatctgacgccttagaccaactcggcca 1076197  T

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Target: scaffold0648 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 617 - 697
Target Start/End: Original strand, 7745 - 7825
Alignment:
Q  617 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7745 tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtct 7825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 617 - 697
Target Start/End: Original strand, 43930110 - 43930190
Alignment:
Q  617 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 697  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43930110 tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtct 43930190  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 33075869 - 33075804
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  33075869 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 33075804  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 689
Target Start/End: Original strand, 55899070 - 55899134
Alignment:
Q  626 tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||||||    
T  55899070 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 55899134  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 228935 - 228867
Alignment:
Q  625 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 689  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
T  228935 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 228867  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 240480 - 240412
Alignment:
Q  625 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 689  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
T  240480 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 240412  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 42678844 - 42678894
Alignment:
Q  629 gatttgaacccacgccctttcggaccagagcctaaatctggcgccttagac 679  Q
    ||||||||  ||||||||||||||| ||| ||| |||||||||||||||||    
T  42678844 gatttgaattcacgccctttcggacgagaaccttaatctggcgccttagac 42678894  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 689
Target Start/End: Original strand, 47819298 - 47819366
Alignment:
Q  625 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 689  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
T  47819298 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 47819366  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 625 - 689
Target Start/End: Complemental strand, 36011959 - 36011894
Alignment:
Q  625 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  36011959 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 36011894  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 689
Target Start/End: Original strand, 30809870 - 30809934
Alignment:
Q  626 tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 689  Q
    ||||||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||||||    
T  30809870 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 30809934  T

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