View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_20 (Length: 292)
Name: NF11877_low_20
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 32632625 - 32632330
Alignment:
| Q |
1 |
aattcttgccatctttctagtgtctacatccatagtaataccataacctatgataaatccaatnnnnnnngtacacattaatgattcaaatcaaacaagt |
100 |
Q |
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| T |
32632625 |
aattcttgccatctttctagtgtctacatccatagtaataccataacctatgataaattcaataaaaaa-gtacacattaatgattcacatcaaacaact |
32632527 |
T |
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| Q |
101 |
aaaaaggagtctaggtaatcctaattgaagaatttgaaacttcaagtatgaaatgcatatgtttgtttcgagaatgcatgtaatattgttttacatatac |
200 |
Q |
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| T |
32632526 |
taaaaggagtctaggtgttcctaattgaagaatttgaaacttcaagtatgaaatgcatatgtttgtttcgagaatgcatgtaatattgttttacacatac |
32632427 |
T |
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| Q |
201 |
atcatgttcgaaatatgatttag-----gtacatcatcaacaagataaagatttttcacactttcaataaatcatagttgtcatatattaaaacgtt |
292 |
Q |
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| T |
32632426 |
gtcgtgttcgaaatatgatttagttcatatacatcatcaacaagataaagatttttcacactttcaataaatcatagttgtcatatattaaaacgtt |
32632330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 32613937 - 32613783
Alignment:
| Q |
2 |
attcttgccatctttctagtgtctacatccatagtaataccataacctatgataaatccaatnnnnnnngtacacattaatgattcaaatcaaacaagta |
101 |
Q |
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||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||| || |||||||||| |||||||| ||| || || |
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| T |
32613937 |
attctcgccatctttctagtgtctatatccatagtaatgccataacctatcataaatataa-aaaaatattacacattaagaattcaaat-aaaaaacta |
32613840 |
T |
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| Q |
102 |
aaaaggagtctaggtaatcctaattgaagaatttgaaacttcaagtatgaaatgcat |
158 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||| ||||||||||||| |
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| T |
32613839 |
taaaggagttatggtaattctaattgaagaatttaaaacttcatgtatgaaatgcat |
32613783 |
T |
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