View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_21 (Length: 257)
Name: NF11877_low_21
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 33167174 - 33167278
Alignment:
| Q |
16 |
tcaaaaacttcaaactcatccatatgttcaccggtcccgaggaatatgacacgactctttgttgctgcaacactgcacatataacattaataagaccaat |
115 |
Q |
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| T |
33167174 |
tcaaaagcttcaaactcatccatatgttcaccggttgctatgaatatgacaggactctttgttgctgcaacactgcacacatagcattaataagaccaat |
33167273 |
T |
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| Q |
116 |
gtacc |
120 |
Q |
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||||| |
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| T |
33167274 |
gtacc |
33167278 |
T |
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 33115457 - 33115556
Alignment:
| Q |
16 |
tcaaaaacttcaaactcatccatatgttcaccggtcccgaggaatatgacacgactctttgttgctgcaacactgcacatataacattaataagaccaat |
115 |
Q |
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| T |
33115457 |
tcaaaaacttcaaactcatccatatgttcaccagttcctatgaatatgaccgaactctttgttgctgcaacactgcacatataacattaataagaccaat |
33115556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 44827245 - 44827137
Alignment:
| Q |
16 |
tcaaaaacttcaaactcatccatatgttcaccggtcccgaggaatatgacacgactctttgttgctgcaacactgcacatataacattaataagaccaat |
115 |
Q |
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||||| |||||||||| ||||||||||||||| || || | |||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
44827245 |
tcaaatacttcaaactgatccatatgttcaccagttcctatgaatatgacaggactctttgttgctgcaacactgcacatataaaattaataag---aat |
44827149 |
T |
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| Q |
116 |
gtacccaaagca |
127 |
Q |
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|||||||||||| |
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| T |
44827148 |
gtacccaaagca |
44827137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 2203203 - 2203279
Alignment:
| Q |
13 |
acatcaaaaacttcaaactcatccatatgttcaccggtcccgaggaatatgacacgactctttgttgctgcaacact |
89 |
Q |
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||||||||||||||||| |||||||| ||||| || || || | |||||||||| |||||||||| || |||||||| |
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| T |
2203203 |
acatcaaaaacttcaaattcatccatgtgttctccagttccaatgaatatgacaggactctttgtagccgcaacact |
2203279 |
T |
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