View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_22 (Length: 253)
Name: NF11877_low_22
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 49535005 - 49534765
Alignment:
| Q |
14 |
gatgaaagcatggagcaattgtactttctgctactatacc-aacaaggtcttgccatgtgtctaacaggcatgtggttgccttagaatgcacgcatcaaa |
112 |
Q |
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| T |
49535005 |
gatgaaagcatggagcaattgtactttctgctactatacccaacaaggtcttgccatgtgtctaacaggcatgtggttgccttagaatgcacgcatcaaa |
49534906 |
T |
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| Q |
113 |
tttatgtaacacgtgtcaacgtgccaatggcatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcaatcaatat |
212 |
Q |
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| T |
49534905 |
tttatgtaacacgtgtcaacgtgccaatggcatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcaatcaatat |
49534806 |
T |
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| Q |
213 |
gtgtagtagaagtagaggatggaaagaataccacattttat |
253 |
Q |
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| T |
49534805 |
gtgtagtagaagtagaggatggaaagaataccacattttat |
49534765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 49108219 - 49108145
Alignment:
| Q |
173 |
accaatacatgaattaagcagtaatgtagtcaatcaatatgtgtagtagaagtagaggatggaaagaataccacattttat |
253 |
Q |
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| T |
49108219 |
accaatacatgaaataagcattaatccagtcaatcaatctgtgtag------tagaggatggaaagaatatcacattttat |
49108145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 38176510 - 38176327
Alignment:
| Q |
22 |
catggagcaattgtactttctgctactataccaacaaggtcttgccatgtgtctaacaggcatgtggttgccttagaatgcacgcatcaaatttatgtaa |
121 |
Q |
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| T |
38176510 |
catggagcaattgtactttttgccactataccaacaagatcttgccatgtgtctagcaggcatgtggttgccttagaatgcacgaa-------------- |
38176425 |
T |
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| Q |
122 |
cacgtgtcaacgtgccaatggcatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcaatcaatatgtgtagtag |
221 |
Q |
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| T |
38176424 |
--cttgtcaacgtgccgatgacatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcgatcaatatgtttagtag |
38176327 |
T |
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