View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11877_low_23 (Length: 248)

Name: NF11877_low_23
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11877_low_23
NF11877_low_23
[»] chr1 (8 HSPs)
chr1 (70-240)||(7898768-7898941)
chr1 (68-222)||(15088031-15088186)
chr1 (68-222)||(22210639-22210794)
chr1 (68-222)||(22219389-22219544)
chr1 (68-222)||(22207076-22207231)
chr1 (71-217)||(51843718-51843864)
chr1 (63-148)||(14115777-14115862)
chr1 (71-165)||(44193647-44193741)
[»] chr7 (7 HSPs)
chr7 (71-240)||(21959343-21959521)
chr7 (67-220)||(4340313-4340467)
chr7 (71-205)||(19802018-19802155)
chr7 (61-222)||(3079187-3079348)
chr7 (61-197)||(3080620-3080753)
chr7 (68-148)||(48477170-48477250)
chr7 (68-148)||(42786733-42786813)
[»] chr4 (10 HSPs)
chr4 (90-240)||(1505138-1505290)
chr4 (76-220)||(6735904-6736049)
chr4 (71-205)||(5579282-5579418)
chr4 (71-240)||(13701736-13701908)
chr4 (71-240)||(13712229-13712401)
chr4 (71-240)||(31666410-31666586)
chr4 (66-148)||(4851809-4851891)
chr4 (68-148)||(2895375-2895455)
chr4 (68-148)||(5908268-5908348)
chr4 (71-153)||(5599025-5599107)
[»] chr3 (10 HSPs)
chr3 (68-220)||(5835055-5835206)
chr3 (71-205)||(14521824-14521959)
chr3 (71-220)||(18110863-18111014)
chr3 (71-220)||(37489146-37489297)
chr3 (71-220)||(28034112-28034261)
chr3 (71-220)||(2747237-2747387)
chr3 (71-205)||(19360045-19360184)
chr3 (68-149)||(19440499-19440580)
chr3 (83-158)||(11418187-11418261)
chr3 (138-220)||(5938232-5938315)
[»] chr2 (4 HSPs)
chr2 (65-220)||(31314411-31314568)
chr2 (71-220)||(31347546-31347698)
chr2 (67-148)||(2696681-2696763)
chr2 (81-149)||(2314081-2314148)
[»] scaffold0043 (1 HSPs)
scaffold0043 (71-220)||(70293-70444)
[»] chr6 (8 HSPs)
chr6 (71-240)||(5131473-5131636)
chr6 (71-220)||(8519050-8519200)
chr6 (65-205)||(28144154-28144298)
chr6 (71-205)||(34256368-34256505)
chr6 (76-220)||(31113789-31113933)
chr6 (71-148)||(33301360-33301437)
chr6 (67-127)||(8706819-8706879)
chr6 (71-166)||(6405888-6405983)
[»] scaffold0158 (2 HSPs)
scaffold0158 (71-205)||(168-304)
scaffold0158 (66-205)||(37624-37766)
[»] chr8 (4 HSPs)
chr8 (65-205)||(5556889-5557033)
chr8 (71-216)||(4844587-4844732)
chr8 (71-163)||(20811240-20811331)
chr8 (130-220)||(3166584-3166675)
[»] chr5 (2 HSPs)
chr5 (71-205)||(41527650-41527787)
chr5 (95-149)||(37456412-37456464)
[»] scaffold0018 (1 HSPs)
scaffold0018 (67-218)||(66158-66311)
[»] scaffold0060 (1 HSPs)
scaffold0060 (66-220)||(45350-45504)
[»] scaffold0046 (1 HSPs)
scaffold0046 (71-148)||(89614-89691)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 7898768 - 7898941
Alignment:
Q  70 aaacacccctactagaaatc-acctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaacta 168  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||  |    
T  7898768 aaacacccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaagatttcctttgaataa 7898867  T
Q  169 --tatagaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttccagcgacttctgcttcttc 240  Q
      ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||    
T  7898868 gatatagaaaattctcgtcttatacctctaaaataacactactgacgtgaacttccagcgacttatgcttcttc 7898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 15088031 - 15088186
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaact 167  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||      
T  15088031 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 15088130  T
Q  168 atata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttcc 222  Q
    | ||| | |||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  15088131 aaatatggaaatgctcgtcttatacctctgaaataataccacttacgtgaacttcc 15088186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 22210639 - 22210794
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaact 167  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||      
T  22210639 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 22210738  T
Q  168 atata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttcc 222  Q
    | ||| | |||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  22210739 aaatatggaaatgctcgtcttatacctctgaaataataccacttacgtgaacttcc 22210794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 22219389 - 22219544
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaact 167  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||      
T  22219389 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 22219488  T
Q  168 atata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttcc 222  Q
    | ||| | |||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  22219489 aaatatggaaatgctcgtcttatacctctgaaataataccattgacgtgaacttcc 22219544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 22207076 - 22207231
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaact 167  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||      
T  22207076 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 22207175  T
Q  168 atata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttcc 222  Q
    | ||| | |||| |||| ||||||| |||||||||| |||||||||||||||||||    
T  22207176 aaatatggaaatgctcgacttatacgtctgaaataataccactgacgtgaacttcc 22207231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 51843718 - 51843864
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    ||||||| ||||||| || |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||| || | |||  | |    
T  51843718 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggtattggatacattaaaattacaataataaaaattcccgcagaataaaa 51843817  T
Q  171 tagaaaattctcgtcttatacctctgaaataacaccactgacgtgaa 217  Q
    || |||||||||||||||||||| |||||||| ||||||||||||||    
T  51843818 tataaaattctcgtcttatacctttgaaataataccactgacgtgaa 51843864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 14115862 - 14115777
Alignment:
Q  63 ggttatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  14115862 ggttgtgaaacacccatactagaaatcacctaggatatctagcatgtgtgttaaacttggcatcggatacattaaaattacaataa 14115777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 44193741 - 44193647
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaa 165  Q
    ||||||||||||||| ||  |||| ||||||||| | | ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  44193741 aacacccctactagacatttcctaagatatctagtacgtgtgttaaacttggcattggatactttaaaattacaattataaaaatttcctctgaa 44193647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 21959521 - 21959343
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--acta 168  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||    
T  21959521 aacacccctactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataataaaaatttcctctgaataata 21959422  T
Q  169 tatagaaaattctcgtcttatacctctgaaa------taacaccactgacgtg-aacttccagcgacttctgcttcttc 240  Q
    |||||||||||||||||||||||||||||||      |||||| ||||||| | |||||||||||||||||||||||||    
T  21959421 tatagaaaattctcgtcttatacctctgaaataacactaacactactgacgcgaaacttccagcgacttctgcttcttc 21959343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 220
Target Start/End: Original strand, 4340313 - 4340467
Alignment:
Q  67 atgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaac 166  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||| |||||||| ||||||     
T  4340313 atgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcggtggatgcattaaaattacaataataaaaatttcttctgaat 4340412  T
Q  167 tatata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
     | ||| | |||| ||||||||||||||||||||||| |||||||||||||||||    
T  4340413 aagatatggaaatgctcgtcttatacctctgaaataataccactgacgtgaactt 4340467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 19802018 - 19802155
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||  | |    
T  19802018 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttgacaatggatacattaaaattacaacaataaaaatttcctctgaataaga 19802117  T
Q  171 t---agaaaattctcgtcttatacctctgaaataacac 205  Q
    |   | |||| |||||||||||||||||||| ||||||    
T  19802118 tacaaaaaaaatctcgtcttatacctctgaagtaacac 19802155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 3079348 - 3079187
Alignment:
Q  61 ttggttatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcct 160  Q
    |||||| |||||||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||  |    
T  3079348 ttggttttgaaacacccctactagacattacctatgatatctagcatgtgtgttaaacttgacattggatacattaaaatttcaataat-aaaatttttt 3079250  T
Q  161 ctgaactatata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttcc 222  Q
    |||||  | ||| | |||| ||| | |||||||| |||||||| ||||||| |||||||||||    
T  3079249 ctgaatgaaatatggaaatgctcattttatacctttgaaataataccactgtcgtgaacttcc 3079187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 3080620 - 3080753
Alignment:
Q  61 ttggttatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcct 160  Q
    |||||| |||||||||||||||||| || ||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  3080620 ttggttttgaaacacccctactagacattacctatgatatctagcatgtgtgtgaaacttggcattggatacattaaaatttcaataataaaaatttcct 3080719  T
Q  161 ctgaactatatagaaaattctcgtcttatacctctga 197  Q
    || || |||   | |||| ||||||||||||| ||||    
T  3080720 ctaaaatat---ggaaatgctcgtcttataccactga 3080753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 48477170 - 48477250
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  48477170 tgaaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattacaataa 48477250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 42786813 - 42786733
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||||||||||||    
T  42786813 tgaaacacccctactagaaatcacctaggatatctagcatttgtgttaaacttggcgtcggatacattaaaattacaataa 42786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 1505138 - 1505290
Alignment:
Q  90 acctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaacta--tatagaaaattctcgtctt 187  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||  |  |||||||||||||||||||    
T  1505138 acctaggatatctagcatgtgtgttaaatttggcattggatacactaaaattacaataataaagatttcctctgaataagatatagaaaattctcgtctt 1505237  T
Q  188 atacctctgaaataacaccactgacgtgaacttccagcgacttctgcttcttc 240  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  1505238 atacctctaaaataacactactgacgtgaacttccaacgacttctgcttcttc 1505290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 6736049 - 6735904
Alignment:
Q  76 ccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--actatatag 173  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||  |  | ||||    
T  6736049 ccctactagaaattacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaaaatttcctatgattaagacatag 6735950  T
Q  174 aaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
     |||||||||||||||||||||||||||| |||| |||| |||||||    
T  6735949 -aaattctcgtcttatacctctgaaataataccagtgacttgaactt 6735904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 5579418 - 5579282
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--acta 168  Q
    ||||||||||||||||||  |||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||||||||| ||||||||||  ||  | ||    
T  5579418 aacacccctactagaaatttcctaggatatctagcatgtgtgctaaatttggcattgaatatattaaaattacaataataaaaatttccttcgaataata 5579319  T
Q  169 tatagaaaattctcgtcttatacctctgaaataacac 205  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5579318 tatagaaaatgctcgtcttatacctctgaaataacac 5579282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 13701736 - 13701908
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataat--gaaaatttcctctgaacta 168  Q
    |||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||| || |||||||  |    
T  13701736 aacaccccgactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataatactaaaaatt-ctctgaaaga 13701834  T
Q  169 tatagaaaattctcgtctt-atacctctga-aataacaccactgacgtgaacttccagcgacttctgcttcttc 240  Q
    | ||||||||||||||||| ||  |  | | |||||||| |||||||||||||||||||||||| |||||||||    
T  13701835 tttagaaaattctcgtcttcatcacaataataataacactactgacgtgaacttccagcgacttttgcttcttc 13701908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 13712229 - 13712401
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataat--gaaaatttcctctgaacta 168  Q
    |||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||| || |||||||  |    
T  13712229 aacaccccgactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataatactaaaaatt-ctctgaaaga 13712327  T
Q  169 tatagaaaattctcgtctt-atacctctga-aataacaccactgacgtgaacttccagcgacttctgcttcttc 240  Q
    | ||||||||||||||||| ||  |  | | |||||||| |||||||||||||||||||||||| |||||||||    
T  13712328 tttagaaaattctcgtcttcatcacaataataataacactactgacgtgaacttccagcgacttttgcttcttc 13712401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 31666586 - 31666410
Alignment:
Q  71 aacacccctactagaaatcacctaggat--atctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaacta 168  Q
    |||||||||||||||||| |||||||||  |||||||||   |||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||  |    
T  31666586 aacacccctactagaaattacctaggatttatctagcatttatgttaaacttggcattggatacattaaaattagaataataaaaaattcttctgaataa 31666487  T
Q  169 tata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaact----tccagcgacttctgcttcttc 240  Q
     ||| | || |||||||||||||||| |||||||| |||||||||| |||||    |||||||||||||| ||||||    
T  31666486 gatatggaagttctcgtcttatacctttgaaataataccactgacgcgaactttagtccagcgacttctgtttcttc 31666410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 4851809 - 4851891
Alignment:
Q  66 tatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  4851809 tatgaaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattacaataa 4851891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 2895455 - 2895375
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  2895455 tgaaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattacaataa 2895375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 5908268 - 5908348
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||    
T  5908268 tgaaacacccttactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattataataa 5908348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 5599025 - 5599107
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaa 153  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || ||||||||| ||||    
T  5599025 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattgaagttacaataaagaaa 5599107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 5835055 - 5835206
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaact 167  Q
    |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||      
T  5835055 tgaaacacccctactataaattacctaggatatctagcatgagtattaaacttggcattggatacattaaaattaccataataaaaatttcctctgaaag 5835154  T
Q  168 atatagaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    |||||| |||||||| | ||||||||||||||||| |||||| ||||||||||    
T  5835155 atatag-aaattctcattttatacctctgaaataataccacttacgtgaactt 5835206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 14521959 - 14521824
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||  | |    
T  14521959 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacaataaaaatttcctctgaataaga 14521860  T
Q  171 ta-gaaaattctcgtcttatacctctgaaataacac 205  Q
    ||  ||||||||||||||||||||||||| ||||||    
T  14521859 tacaaaaattctcgtcttatacctctgaagtaacac 14521824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 18110863 - 18111014
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--acta 168  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||  |||||||||| |||  |  |    
T  18110863 aacacccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggatacattaaaatttcaacaacaaaaatttcctttgaataaga 18110962  T
Q  169 tatagaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    || |||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  18110963 tacagaaaattctcgtcttatacctttgaaataacactactggcgtgaactt 18111014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 37489146 - 37489297
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--acta 168  Q
    ||||||||||||| || |  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||  |  |    
T  37489146 aacacccctactaaaattttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaatactaaaaatttcctctgaataaga 37489245  T
Q  169 tatagaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    |||| ||||||||| |  |||||||||| |||||||||||||| ||||||||    
T  37489246 tataaaaaattctccttatatacctctgcaataacaccactgatgtgaactt 37489297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 28034112 - 28034261
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    ||||||||||||||||||  || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||  | |||||||  |||    
T  28034112 aacacccctactagaaatttccaaggatatctagcatgtgtgttaaaattggcattggatacattaaaattacaataataaaaaaattctctgaaagata 28034211  T
Q  171 tagaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    |||||| || || || |||| ||||| |||||||||||||| ||||||||    
T  28034212 tagaaatttttcttcatatatctctgcaataacaccactgatgtgaactt 28034261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 2747387 - 2747237
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    |||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |  | |    
T  2747387 aacacccctactagaaattacctaggatatctagaatgtatgttaaacttggcattggatacattaaaattacaatagtaaaaatttcctctggataaga 2747288  T
Q  171 ta-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    || |  ||||| ||||||||||||||| | ||| |||| |||| |||||||    
T  2747287 tatggtaattcccgtcttatacctctggagtaataccattgacatgaactt 2747237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 19360184 - 19360045
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||  | |    
T  19360184 aacacccctactagaaattacatacgatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctctgaataaga 19360085  T
Q  171 t-----agaaaattctcgtcttatacctctgaaataacac 205  Q
    |     | ||||||| ||||||||||||||||| ||||||    
T  19360084 tacaaaaaaaaattcccgtcttatacctctgaagtaacac 19360045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 19440499 - 19440580
Alignment:
Q  68 tgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataat 149  Q
    ||||||| |||| |||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  19440499 tgaaacatccctgctagaaattacctaggatatctagcgtgtgtgttaaacttggcattgggtacattaaaattacaataat 19440580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 11418187 - 11418261
Alignment:
Q  83 agaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttc 158  Q
    |||||| ||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  11418187 agaaattacctaggatatctagcacgtgcgttaaacttggcattgcatacattaaaattacaataat-aaaatttc 11418261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 5938232 - 5938315
Alignment:
Q  138 aattacaataatgaaaatttcctctgaactatataga-aaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    |||||| ||||| |||||||||||||||  | ||| | |||||||| ||||||||||||||||||| |||||| ||||||||||    
T  5938232 aattaccataataaaaatttcctctgaataagatatagaaattctcatcttatacctctgaaataataccacttacgtgaactt 5938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 31314411 - 31314568
Alignment:
Q  65 ttatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga 164  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| || |||    
T  31314411 ttatgtaacacccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacaataaaaattttctttga 31314510  T
Q  165 --actatatagaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
      |  ||| ||||||||||||||||||||||  |||||||||| |||| |||||||||    
T  31314511 ataggatacagaaaattctcgtcttataccttggaaataacactactggcgtgaactt 31314568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 31347698 - 31347546
Alignment:
Q  71 aacacccctactagaaatcacctaggat--atctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaacta 168  Q
    |||||||||||||||||| |||||||||  |||||||||  |||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||  |    
T  31347698 aacacccctactagaaattacctaggatttatctagcatttgtgttaaagttggcattggatacattaaaattagaataatcaaaacttcctctgaataa 31347599  T
Q  169 tata-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
     ||| | || ||||||||||||| ||||||||||| |||||||||||||||||    
T  31347598 gatatggaagttctcgtcttataactctgaaataataccactgacgtgaactt 31347546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 2696763 - 2696681
Alignment:
Q  67 atgaaacacccc-tactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||| || |||||||||    
T  2696763 atgaaacaccccctactagaaatcacctaggatatctaggatgtgtgttaaacttggcgtcggatacattgaagttacaataa 2696681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 2314148 - 2314081
Alignment:
Q  81 ctagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataat 149  Q
    |||||||| |||||| |||||||||||| | |||| ||| || | | ||||||||||||||||||||||    
T  2314148 ctagaaattacctagaatatctagcatgtgcgttagact-ggtaatagatacattaaaattacaataat 2314081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 70444 - 70293
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--acta 168  Q
    ||||||||||||||| ||  |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  |  |    
T  70444 aacacccctactagacatttcctaggatatctagcatgtgtgttaaacttggcattgaatacattaaaattacaataataaaaatttcctctgaataaga 70345  T
Q  169 tatagaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    |||||||||||||| || |||||||||| ||||| |||||| || |||||||    
T  70344 tatagaaaattctcttcatatacctctgcaataagaccactaacttgaactt 70293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 5131636 - 5131473
Alignment:
Q  71 aacacccctactagaaatc-acctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactat 169  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||  |     
T  5131636 aacacccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaagatttcttctgaataag 5131537  T
Q  170 atagaaaattctcgtcttatacctctgaaataacaccactgacgtgaacttccagcgacttctgcttcttc 240  Q
    ||| | |       |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  5131536 atataga-------tcttatacctctaaaataacactactgacgtgaacttccagcgacttctgcttcttc 5131473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 8519050 - 8519200
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||| | ||||  | |    
T  8519050 aacacccctactagacattacctaggatatctagcatgcgtgttaaacttggcagtggatacattaaaatcacaataataaaaatttcttttgaataaga 8519149  T
Q  171 ta-gaaaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    || | |||| |||||||||| |||||||||||| |||||||||||||||||    
T  8519150 tatggaaatgctcgtcttatgcctctgaaataataccactgacgtgaactt 8519200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 28144154 - 28144298
Alignment:
Q  65 ttatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga 164  Q
    ||||| ||||||||||||||||||  |||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||    
T  28144154 ttatgtaacacccctactagaaatttcctatgatatctagcatgtatgttaaaattggcattggatacattaaaattacaataataaaaatttcctcgga 28144253  T
Q  165 --actatatagaaaattctcgtct--tatacctctgaaataacac 205  Q
      | ||||||||||||||||||||  |||||||||||||||||||    
T  28144254 ataatatatagaaaattctcgtcttatatacctctgaaataacac 28144298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 34256505 - 34256368
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||| ||||  | |    
T  34256505 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctttgaataaga 34256406  T
Q  171 t---agaaaattctcgtcttatacctctgaaataacac 205  Q
    |   | ||||||||||||||||||||||||| ||||||    
T  34256405 tacaaaaaaattctcgtcttatacctctgaagtaacac 34256368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 31113933 - 31113789
Alignment:
Q  76 ccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactatatagaa 175  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||  | |||||||  | | | |     
T  31113933 ccctactagaaattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaacaataaaaaaattctctgaataaaacatag 31113834  T
Q  176 aattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    || |||||| |||||||||| |||||| | || ||||||||||||    
T  31113833 aaatctcgtattatacctctaaaataatatcaatgacgtgaactt 31113789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 33301437 - 33301360
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||    
T  33301437 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgttggatacattgaagttacaataa 33301360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 8706879 - 8706819
Alignment:
Q  67 atgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8706879 atgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttgacattg 8706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 6405888 - 6405983
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaac 166  Q
    ||||||| |||||||||| || |||||||||||||||| | ||||||||||||| | |||||||||||||||||||||| |||| || ||||||||    
T  6405888 aacacccatactagaaattacataggatatctagcatgtgcgttaaacttggcacttgatacattaaaattacaataattaaaaatttctctgaac 6405983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 304 - 168
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga--acta 168  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||  |  |    
T  304 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacgataaaaatttcctctgaataaga 205  T
Q  169 tatagaaaattctcgtcttatacctctgaaataacac 205  Q
    || | |||||| |||||||||||||||||| ||||||    
T  204 tacaaaaaattatcgtcttatacctctgaagtaacac 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 37766 - 37624
Alignment:
Q  66 tatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataat-gaaaatttcctctga 164  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  ||  ||||||||||||||    
T  37766 tatgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcagtggatacattaaaatgacaacgataaaaaatttcctctga 37667  T
Q  165 --actatatagaaaattctcgtcttatacctctgaaataacac 205  Q
      |  ||| | ||||||||||||||||||||||||| ||||||    
T  37666 ataagatacaaaaaattctcgtcttatacctctgaagtaacac 37624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 5556889 - 5557033
Alignment:
Q  65 ttatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctga 164  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||    
T  5556889 ttatgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctctga 5556988  T
Q  165 a----ctatatagaaaattctcgtcttatacctctgaaataacac 205  Q
    |     || | | ||||||| ||||||||||||||||| ||||||    
T  5556989 ataagatacaaaaaaaattcccgtcttatacctctgaagtaacac 5557033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 4844732 - 4844587
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaact--a 168  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |  |    
T  4844732 aacacccctactagaaatttcctaggatatctagcatg--tgttaaacttgggattggatacattaaaattacaataatacaaatttcctctgaattaga 4844635  T
Q  169 tatagaaaattctcgtcttatacctctgaaataacaccactgacgtga 216  Q
    ||| || |||||||||| || |||| ||||||||||||||||| ||||    
T  4844634 tattgagaattctcgtcctagacctttgaaataacaccactgatgtga 4844587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 20811331 - 20811240
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctg 163  Q
    |||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  20811331 aacacccctactagaatttacgtaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataat-aaaacttcctctg 20811240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 3166675 - 3166584
Alignment:
Q  130 tacattaaaattacaataatgaaaatttcctctgaactatataga-aaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
    |||||||||||| ||||||| || ||||||||| ||  | ||| | ||||| ||||||||||||| |||||||| |||||||  ||||||||    
T  3166675 tacattaaaatttcaataataaatatttcctctaaataagatatagaaattttcgtcttatacctttgaaataataccactgcagtgaactt 3166584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 41527650 - 41527787
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaactata 170  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||  | |    
T  41527650 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctctgaataaga 41527749  T
Q  171 t---agaaaattctcgtcttatacctctgaaataacac 205  Q
    |   | ||||||| ||||||||||||||||| ||||||    
T  41527750 tacaaaaaaattcccgtcttatacctctgaagtaacac 41527787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 37456464 - 37456412
Alignment:
Q  95 ggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataat 149  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  37456464 ggatatctagcatgagt--taaacttggcattggatacattaaaattataataat 37456412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 66311 - 66158
Alignment:
Q  67 atgaaacacccctactagaaatcacctaggatatctagcat-gagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaa 165  Q
    |||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||| ||| |||||||||||||||  |||| || || ||||    
T  66311 atgaaacacccctactagaaattacctagaatatctagcatggtgtgttaaacttggcattgggtacgttaaaattacaataagaaaaaatttctttgaa 66212  T
Q  166 ctatataga-aaattctcgtcttatacctctgaaataacaccactgacgtgaac 218  Q
      | ||| | ||||||||||||||||||||| |||||| |||||||||||||||    
T  66211 taagatatagaaattctcgtcttatacctctaaaataataccactgacgtgaac 66158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 45504 - 45350
Alignment:
Q  66 tatgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataatgaaaatttcctctgaa 165  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |||||  |||||||||||| ||||||| || ||||||||||||    
T  45504 tatgaaacaccc-tactagaaattacctaggatatctagcatgtgtgttaaacttgacattgagtacattaaaatttcaataataaatatttcctctgaa 45406  T
Q  166 ctatataga-aaattctcgtcttatacctctgaaataacaccactgacgtgaactt 220  Q
      | ||| | ||||| | || ||||||||||||||||| |||||| | ||||||||    
T  45405 taagatatagaaatttttgtattatacctctgaaataataccactcatgtgaactt 45350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 89614 - 89691
Alignment:
Q  71 aacacccctactagaaatcacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacaataa 148  Q
    ||||||||||||||||||   ||||||||||||||||| | ||||||||||| | |||||||||||||||||||||||    
T  89614 aacacccctactagaaattttctaggatatctagcatgtgcgttaaacttggtactggatacattaaaattacaataa 89691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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