View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11877_low_3 (Length: 643)
Name: NF11877_low_3
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 639
Target Start/End: Complemental strand, 33116203 - 33115581
Alignment:
| Q |
17 |
cacagacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtccaatggtga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33116203 |
cacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttcctttcatggtccaatggtga |
33116104 |
T |
|
| Q |
117 |
tatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116103 |
tatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaacc |
33116004 |
T |
|
| Q |
217 |
agtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatcca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116003 |
agtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatcca |
33115904 |
T |
|
| Q |
317 |
tccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagtcatagcagttccaagcaagtgaagtcca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115903 |
tccaattgcactgaaaatatctttctggaaaagattttgactataataagcaatatccaacaagaaccaagtcatagcagttccaagcaagtgaagtcca |
33115804 |
T |
|
| Q |
417 |
tggcggcgaagaaacctttttgtaaacaaaccaaaatcattccctccttgtctctgattttgatccaattgctggattttttcttgttcagcttctatat |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33115803 |
tggcggcgaagaaacctttttgtaaacaaaccaaaatcattccttccttgtctctgattttgatccaattgctggattttttcctgttcagcttctatat |
33115704 |
T |
|
| Q |
517 |
caacttgcaaaactttcgacatatctgcagcagcctgtatactattctttgcaactaaggcggtatatcttgcagtttcaggcattttcatcctccagta |
616 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115703 |
caacttgcaaaactttcgacatgtctgcagcagcctgtatactattctttgcaactaaggcggtatatcttgcagtttcaggcattttcatcctccagta |
33115604 |
T |
|
| Q |
617 |
gtaagtaagcaatgccggaattg |
639 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33115603 |
gtaagtaagcaatgccggaattg |
33115581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 133 - 373
Target Start/End: Original strand, 30619944 - 30620184
Alignment:
| Q |
133 |
caaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaacagt |
232 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| || || || || || ||||||||||||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
30619944 |
caaacataaaaactgtcataaagaaaaatcccattaactgaatagtgaaccttccaattctatcaatgaatgcaactgtgaaccagtaaccaggaactgt |
30620043 |
T |
|
| Q |
233 |
actgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatccatccaattgcactgaaa |
332 |
Q |
| |
|
|||||| | ||| || ||||| || || || ||||| || ||||||||||| || ||| |||| || || || |||||||| |||||||||||||| |
|
|
| T |
30620044 |
actgcataatgcaataagtgtttgcgccctcgcaattttataaacctcttcaagtgcattcatcgtctttgcagacggaatccaaccaattgcactgaag |
30620143 |
T |
|
| Q |
333 |
atatctttctggaaaagattctgactataataagcaatatc |
373 |
Q |
| |
|
||||| || ||||||||||||||||| ||| | |||||||| |
|
|
| T |
30620144 |
atatccttttggaaaagattctgactgtaaaatgcaatatc |
30620184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 24 - 385
Target Start/End: Complemental strand, 16185055 - 16184694
Alignment:
| Q |
24 |
gtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtccaatggtgatatggaa |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||| || | | | || ||||||| | |||||| | |
|
|
| T |
16185055 |
gtcgtagcatttggaccaaaattagcaaagaagaatgtgagtgagtacattacaacaaacccaattctattctcttccttgctccaatgatcatatggta |
16184956 |
T |
|
| Q |
124 |
tggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaacc |
223 |
Q |
| |
|
|||| | | ||||||||||||| ||||||||||| |||||||||| ||| || | || | || || ||| || | ||| || |||||||||||||| |
|
|
| T |
16184955 |
tggcaagtgcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaatgctaccgtgaaccagtaacc |
16184856 |
T |
|
| Q |
224 |
aggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatccatccaatt |
323 |
Q |
| |
|
|||||||||||||| | || || ||||| |||||||| ||||||||||||||||| | | ||| |||| ||| || || |||||||||||| |
|
|
| T |
16184855 |
cggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccggaggtatccatccaatt |
16184756 |
T |
|
| Q |
324 |
gcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaacca |
385 |
Q |
| |
|
|| || ||||| || || |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
16184755 |
gcgctaaaaatgtccttttggaaaagattctgactatagaaagcaatatccaacaaaaacca |
16184694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 16174313 - 16174671
Alignment:
| Q |
30 |
gcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtccaatggtgatatggaatggcca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||| || | | | || ||||||| | |||||| ||||| | |
|
|
| T |
16174313 |
gcatttggaccaaaattagcaaagaagaatgttagtgagtacattacaacaaacccaattctattctcttccttgctccaatgatcatatggtatggcaa |
16174412 |
T |
|
| Q |
130 |
atccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaac |
229 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| ||| || | || | || || ||| || | ||| |||||||||||||| || ||||| |
|
|
| T |
16174413 |
gagcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaatgcgactgtgaaccagtagcccggaac |
16174512 |
T |
|
| Q |
230 |
agtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatccatccaattgcactg |
329 |
Q |
| |
|
||||||||| | || || ||||| |||||||| ||||||||||||||||| | | ||| |||| ||| || || |||||||| ||||| || |
|
|
| T |
16174513 |
agtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccggagggatccatccgattgcgcta |
16174612 |
T |
|
| Q |
330 |
aaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
388 |
Q |
| |
|
||||| || || |||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
16174613 |
aaaatgtccttttggaaaagattctgactatagaaagcaatatccaacaaaaaccaagt |
16174671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 385
Target Start/End: Complemental strand, 16224445 - 16224084
Alignment:
| Q |
24 |
gtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtccaatggtgatatggaa |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||| || || |||||||| |||||| || | | | || ||||||| | |||||| | |
|
|
| T |
16224445 |
gtcgtagcatttggaccaaaattagcaaagaagaatgtgagtgagtatattacaacaaacccaattctattctcttccttgctccaatgatcatatggta |
16224346 |
T |
|
| Q |
124 |
tggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaacc |
223 |
Q |
| |
|
|||| | | ||||||||||||| ||||||||||| |||||||||| ||| || | || | || || ||| || | || ||||||||||||||||| |
|
|
| T |
16224345 |
tggcaagtgcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacc |
16224246 |
T |
|
| Q |
224 |
aggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatccatccaatt |
323 |
Q |
| |
|
|||||||||||||| | || || ||||| |||||||| ||||||||||||||||| | | ||| |||| ||| || || |||||||| ||| |
|
|
| T |
16224245 |
cggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccggagggatccatccgatt |
16224146 |
T |
|
| Q |
324 |
gcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaacca |
385 |
Q |
| |
|
|| || ||||| || || |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
16224145 |
gcgctaaaaatgtccttttggaaaagattctgactatagaaagcaatatccaacaaaaacca |
16224084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 30615190 - 30615292
Alignment:
| Q |
133 |
caaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaacagt |
232 |
Q |
| |
|
||||||| ||||| ||||| ||||| |||||||| || || || || || ||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30615190 |
caaacataaaaactgtcataaagaagaatcccattaactgaatagtgaaccttcccattctatcaatgagtgccactgtgaaccagtaaccaggaactgt |
30615289 |
T |
|
| Q |
233 |
act |
235 |
Q |
| |
|
||| |
|
|
| T |
30615290 |
act |
30615292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 33110149 - 33109791
Alignment:
| Q |
30 |
gcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtccaatggtgatatggaatggcca |
129 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||||| |||| | ||| | |||||||| | ||| || || || | |
|
|
| T |
33110149 |
gcatttggaccgaaattggcaaaaaagaaagttaatgagtacattacaacaaacccaattctgttttctttcttagtccaatgatcataaggtatagcta |
33110050 |
T |
|
| Q |
130 |
atccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaac |
229 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||| | ||| | || || ||| || | ||||||||| ||||||||||| || || |
|
|
| T |
33110049 |
gagcaaacatgaagacggtcatgaagaagaaacccatcaattggatcgcaaaacgacccatgtaatcgataaatgccactgtaaaccagtaacctggcac |
33109950 |
T |
|
| Q |
230 |
agtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatccatccaattgcactg |
329 |
Q |
| |
|
|||||||| | |||||| || || |||||||| |||||| | || | || | | ||| |||| ||| ||| || ||||| ||||| || || |
|
|
| T |
33109949 |
tgtactgcacaatgctataagggtttgtgctcttgcaatcctatacagttcgttaattgcattcatttcttttgctggagggatccacccaatcgcggtg |
33109850 |
T |
|
| Q |
330 |
aaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
388 |
Q |
| |
|
|||||||| || || |||||||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
33109849 |
aaaatatccttttgaaaaagattctgactgtagaaagcaatgtccaacaagaaccaagt |
33109791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 116 - 388
Target Start/End: Complemental strand, 38894145 - 38893873
Alignment:
| Q |
116 |
atatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaac |
215 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||| ||||| |||||||||||||||||| |||| ||||| || || |||||||| ||||| || ||| |
|
|
| T |
38894145 |
atatggaatggcaagagcaaacatgaagacagtcataaagaagaatcccatcaattggattttaaaccttcctatcctgtcaatgagagccaccgtaaac |
38894046 |
T |
|
| Q |
216 |
cagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatcc |
315 |
Q |
| |
|
||||| || ||||| |||||||| || || || ||||| || ||||| || || ||||||||||| || || ||| ||||||||| || ||| |||| |
|
|
| T |
38894045 |
cagtagcctggaactgtactgcatagagcaataagtgtttgagctcttgcgattttgtaaacctcctcaagtgcattcatagtttgtgcaggtggtatcc |
38893946 |
T |
|
| Q |
316 |
atccaattgcactgaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
388 |
Q |
| |
|
| |||||||||||||| ||||| |||||||| ||||| ||||| ||| | || ||||| | |||||||||||| |
|
|
| T |
38893945 |
aaccaattgcactgaagatatccttctggaagagattttgactgtaaaatgctatatcaagcaagaaccaagt |
38893873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 38885045 - 38884687
Alignment:
| Q |
30 |
gcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatg-gtccaatggtgatatggaatggcc |
128 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||| ||||| || || ||||| || ||| ||||| | || ||| ||||| || | ||| |||||||| |
|
|
| T |
38885045 |
gcattaggcccaaaatttgcaaagaagaaggtcaaggaatatatcaccacaaatcctattcggttttcctt-atgagtccagtgttcataaggaatggca |
38884947 |
T |
|
| Q |
129 |
aatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaa |
228 |
Q |
| |
|
| |||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||||| || |||| ||||| || ||||| ||||| |||| |
|
|
| T |
38884946 |
agagcaaacatgaaggcagtcataaagaagaatcccatcaattggatggtaaatcttcctattctgtctatgaaagccacggtaaaccaataacctggaa |
38884847 |
T |
|
| Q |
229 |
cagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctcttcgagggcactcatagttttagcttctggaatccatccaattgcact |
328 |
Q |
| |
|
| |||||||| || || || ||||| || |||| |||||| ||||||||||| || || ||| |||| |||| | ||| ||||| |||||||| || |
|
|
| T |
38884846 |
ctgtactgcatagagcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtggaggtggtatccaaccaattgcgct |
38884747 |
T |
|
| Q |
329 |
gaaaatatctttctggaaaagattctgactataataagcaatatccaacaagaaccaagt |
388 |
Q |
| |
|
||||||||| |||||||| ||||| || |||||| | || ||||| | |||||||||||| |
|
|
| T |
38884746 |
gaaaatatccttctggaagagattttggctataaaatgctatatcaagcaagaaccaagt |
38884687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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