View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_30 (Length: 220)
Name: NF11877_low_30
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 12950751 - 12950882
Alignment:
| Q |
13 |
gaagcagagacgttgaattggtgaagatgttttgtatattttgtactatgagaatgttatgctaaataggacaaagcaaagccacttttgtggcaaatta |
112 |
Q |
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| T |
12950751 |
gaagcagggacgttgaattggggaagatgttttgtatattttgtactatgagaatgttatgctaaataggacaaagcaaagccacttttgtggcaaatta |
12950850 |
T |
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| Q |
113 |
aaagttgtttctatttctggcttacattgtaa |
144 |
Q |
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| T |
12950851 |
aaagttgtttctatttctagcttacattgtaa |
12950882 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 12953568 - 12953637
Alignment:
| Q |
76 |
aaataggacaaagcaaagccacttttgtggcaaattaaaagttgtttctatttctggcttacattgtaag |
145 |
Q |
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| T |
12953568 |
aaataggacaaagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgtaag |
12953637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 24508060 - 24508126
Alignment:
| Q |
76 |
aaataggacaaagcaaagccacttttgtggcaaattaaaagttgtttctatttctggcttacattgt |
142 |
Q |
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| T |
24508060 |
aaataggacaaagcaaagccacttttgtgccaaattaaaagttgcttctatttctagcttacattgt |
24508126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 12925507 - 12925438
Alignment:
| Q |
76 |
aaataggacaaagcaaagccacttttgtggcaaattaaaagttgtttctatttctggcttacattgtaag |
145 |
Q |
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| T |
12925507 |
aaataggacaaagcatatccagttttgtggcaaattaaaagttgtttctatttctagcttacattgtaag |
12925438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 12917701 - 12917627
Alignment:
| Q |
86 |
aagcaaagccacttttgtggcaaattaaaagttgtttctatttctggcttacattgtaagctcaggtgaaatgga |
160 |
Q |
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| T |
12917701 |
aagcaaatccacttttgtggcaaattaaaagttgtttctatttcaagcttacattgtcacctcatgtgaaatgga |
12917627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 12939688 - 12939762
Alignment:
| Q |
86 |
aagcaaagccacttttgtggcaaattaaaagttgtttctatttctggcttacattgtaagctcaggtgaaatgga |
160 |
Q |
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| T |
12939688 |
aagcaaatccacttttgtggcaaattaaaagttgtttctatttcaagcttacattgtcacctcatgtgaaatgga |
12939762 |
T |
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