View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11877_low_4 (Length: 606)

Name: NF11877_low_4
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11877_low_4
NF11877_low_4
[»] chr4 (10 HSPs)
chr4 (51-592)||(4732266-4732807)
chr4 (174-259)||(9354719-9354806)
chr4 (466-592)||(10576384-10576510)
chr4 (21-72)||(4732209-4732261)
chr4 (183-259)||(6337770-6337848)
chr4 (183-259)||(41457318-41457396)
chr4 (187-262)||(9409432-9409509)
chr4 (185-256)||(24924634-24924706)
chr4 (324-368)||(16403932-16403976)
chr4 (227-259)||(16674917-16674949)
[»] chr6 (14 HSPs)
chr6 (174-259)||(16142319-16142406)
chr6 (183-262)||(14767088-14767169)
chr6 (186-255)||(18713496-18713567)
chr6 (185-259)||(242288-242362)
chr6 (466-562)||(12972472-12972568)
chr6 (183-259)||(17296459-17296537)
chr6 (174-262)||(17524643-17524733)
chr6 (174-262)||(17948160-17948250)
chr6 (207-259)||(10163506-10163558)
chr6 (208-259)||(4031290-4031341)
chr6 (173-247)||(17352546-17352621)
chr6 (173-259)||(28712142-28712228)
chr6 (174-259)||(13003075-13003161)
chr6 (205-259)||(16793078-16793132)
[»] scaffold1102 (1 HSPs)
scaffold1102 (199-259)||(1173-1233)
[»] chr5 (16 HSPs)
chr5 (173-259)||(10235813-10235900)
chr5 (183-259)||(31533277-31533355)
chr5 (184-257)||(23355434-23355509)
chr5 (469-592)||(26070409-26070531)
chr5 (186-262)||(17167561-17167639)
chr5 (172-259)||(24878128-24878217)
chr5 (192-259)||(21390454-21390522)
chr5 (173-250)||(24411111-24411190)
chr5 (174-262)||(19924263-19924353)
chr5 (208-259)||(22847826-22847877)
chr5 (184-259)||(23379475-23379552)
chr5 (205-259)||(24663360-24663414)
chr5 (214-259)||(28619498-28619543)
chr5 (231-263)||(20064728-20064760)
chr5 (227-259)||(21166433-21166465)
chr5 (199-259)||(25667529-25667589)
[»] chr3 (14 HSPs)
chr3 (183-259)||(8737455-8737533)
chr3 (183-259)||(9089693-9089771)
chr3 (467-592)||(21829190-21829315)
chr3 (174-259)||(14132343-14132430)
chr3 (205-263)||(4765957-4766015)
chr3 (173-262)||(4832795-4832884)
chr3 (173-254)||(12144761-12144843)
chr3 (207-259)||(15987373-15987425)
chr3 (183-259)||(27718238-27718316)
chr3 (174-262)||(23378268-23378355)
chr3 (183-259)||(53589370-53589447)
chr3 (174-262)||(27304680-27304770)
chr3 (186-259)||(25320968-25321042)
chr3 (227-259)||(5495372-5495404)
[»] chr8 (14 HSPs)
chr8 (173-256)||(27123898-27123983)
chr8 (183-261)||(9217939-9218019)
chr8 (173-261)||(12669073-12669163)
chr8 (173-264)||(24681039-24681132)
chr8 (183-259)||(13109976-13110054)
chr8 (183-259)||(18672411-18672489)
chr8 (183-259)||(25094841-25094919)
chr8 (466-592)||(10866919-10867045)
chr8 (182-253)||(9286641-9286714)
chr8 (184-257)||(10600443-10600519)
chr8 (183-257)||(22713908-22713984)
chr8 (172-259)||(22450315-22450403)
chr8 (466-533)||(30851216-30851283)
chr8 (174-259)||(19709738-19709824)
[»] scaffold0039 (2 HSPs)
scaffold0039 (183-259)||(51871-51949)
scaffold0039 (198-259)||(33495-33556)
[»] chr1 (10 HSPs)
chr1 (203-262)||(22608130-22608189)
chr1 (186-259)||(25018428-25018499)
chr1 (183-262)||(36571963-36572044)
chr1 (199-259)||(17615060-17615120)
chr1 (203-262)||(33102838-33102897)
chr1 (207-259)||(16083456-16083508)
chr1 (186-259)||(22785332-22785406)
chr1 (466-592)||(26101988-26102114)
chr1 (523-592)||(18795169-18795238)
chr1 (202-246)||(20866051-20866095)
[»] scaffold0337 (1 HSPs)
scaffold0337 (174-262)||(4321-4411)
[»] chr2 (17 HSPs)
chr2 (173-261)||(25520677-25520767)
chr2 (207-259)||(23388929-23388981)
chr2 (173-262)||(24543641-24543732)
chr2 (173-259)||(17162254-17162341)
chr2 (467-533)||(19540969-19541035)
chr2 (173-259)||(17636482-17636569)
chr2 (184-262)||(18929103-18929183)
chr2 (174-257)||(20515802-20515886)
chr2 (205-257)||(29891564-29891616)
chr2 (184-259)||(17676351-17676427)
chr2 (173-259)||(32890171-32890259)
chr2 (174-259)||(31404342-31404429)
chr2 (481-592)||(24047328-24047439)
chr2 (174-262)||(26650696-26650785)
chr2 (466-589)||(32276574-32276697)
chr2 (542-592)||(17152160-17152210)
chr2 (214-259)||(13370182-13370227)
[»] scaffold0002 (1 HSPs)
scaffold0002 (174-262)||(376447-376538)
[»] scaffold0142 (1 HSPs)
scaffold0142 (183-259)||(20323-20401)
[»] scaffold0065 (1 HSPs)
scaffold0065 (174-262)||(15065-15155)
[»] chr7 (9 HSPs)
chr7 (183-259)||(18084069-18084147)
chr7 (201-259)||(18046259-18046317)
chr7 (186-259)||(41131701-41131776)
chr7 (183-252)||(7524993-7525063)
chr7 (183-263)||(14987347-14987429)
chr7 (183-263)||(15416958-15417040)
chr7 (186-250)||(7948252-7948317)
chr7 (183-259)||(12468696-12468773)
chr7 (174-262)||(3743232-3743325)
[»] scaffold0190 (1 HSPs)
scaffold0190 (466-592)||(11755-11881)
[»] scaffold0185 (1 HSPs)
scaffold0185 (469-592)||(1378-1500)
[»] scaffold0148 (1 HSPs)
scaffold0148 (183-259)||(22777-22855)
[»] scaffold0024 (1 HSPs)
scaffold0024 (207-260)||(39167-39220)
[»] scaffold0016 (1 HSPs)
scaffold0016 (184-259)||(12913-12990)
[»] scaffold0014 (1 HSPs)
scaffold0014 (199-257)||(191979-192037)


Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 51 - 592
Target Start/End: Original strand, 4732266 - 4732807
Alignment:
Q  51 aaacacaaattataaaacacaaattatctgcccaacaattcaacatctgaaagggtttgggaccccaattctcattaaccgacaaaataatgggagcaat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  4732266 aaacacaaattataaaacacaaattatctgcccaacaattcaacatctgaaagggtttgggacccaaattctcattaaccaacaaaataatgggggcaat 4732365  T
Q  151 aataggatagacatcttagtcgttgtttacgcgtgtttttggtaaacaaagggctggttttggttattacaaacatgatcaaaccagaaattctaggaca 250  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  4732366 aatcggatagacatcttagtcgttgtttacgcgtgtttttggtaaacaaagggctggttttggttattacaaacaggatcaaaccagaaatcctaggaca 4732465  T
Q  251 tgttgtgcatttttcgatttaaaagacgtttatcaaaatgtgtttgaaaaatcttcatattattcattctgaacccatggtgcaagtccaccaatctaaa 350  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4732466 tgttgtgcatttttcgatttagaagacgtttatcaaagtgtgtttgaaaaatcttcatattattcattctgaacccatggtgcaagtccaccaatctaaa 4732565  T
Q  351 ataccacacttcaactcaatttccacacacttatgtgaaatctcagcctagtacctatcaactacctcacaccccataacaaataagctcaactgacact 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  4732566 ataccacacttcaactcaatttccacacacttatgtgaaatctcaacctagtacctatcaactacctcacaccccataacaaataagctcacttgacact 4732665  T
Q  451 ttatcaatgagcaaggtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttaga 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4732666 ttatcaatgagcaaggtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttaga 4732765  T
Q  551 ggaattgtcaatcctttgatgaacattttgtattattttcat 592  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  4732766 ggaattgtcaatcctttgatgaacattttatattgttttcat 4732807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 9354806 - 9354719
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||  |||||||||||||| ||  | ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  9354806 tgtttactagtgtttttggtaaataagaaaggctggttttggttattacattcatgatcaaaccagaaattataggacatgttgtgca 9354719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 466 - 592
Target Start/End: Original strand, 10576384 - 10576510
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcct 565  Q
    |||||||||||  ||||||||| ||||| | || || |||| |||||||||| | | ||||||||||| || |||||||||||||| | ||||| ||  |    
T  10576384 gtgatgatggagtatcatatgatattttagactatgtttttagttattttctttccatttgaaggaaaataagagatcatttagagaagttgtccatggt 10576483  T
Q  566 ttgatgaacattttgtattattttcat 592  Q
    |||| |||||||||||||| |||||||    
T  10576484 ttgaagaacattttgtattgttttcat 10576510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 4732209 - 4732261
Alignment:
Q  21 aggggcaactattaaa-tgcaacaaacatgcaaacacaaattataaaacacaa 72  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4732209 aggggcaactattaaaatgcaacaaacatgcaaacacaaattataaaacacaa 4732261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 6337770 - 6337848
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||| |||||||  ||||||| |||||||||||||| |||  ||||||||||||||  ||||||||||||||||    
T  6337770 gtgtttttgataaacaagaagggctgattttggttattacagacagaatcaaaccagaaatcttaggacatgttgtgca 6337848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 41457318 - 41457396
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  |||| ||||||||||||||| ||  | |||||||||||||||||  |||| |||||||||    
T  41457318 gtgtttttggtaaacaagaagggatggttttggttattaaaagtaggatcaaaccagaaattcctggacttgttgtgca 41457396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 9409509 - 9409432
Alignment:
Q  187 ttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||||||||  |||||||||||| ||||||||||  | |||||||| | ||| | |||||||||||||||||||    
T  9409509 ttttggtaaacaacgagggctggtttttgttattacaagaaggatcaaacaaaaaaatttaggacatgttgtgcattt 9409432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 24924634 - 24924706
Alignment:
Q  185 gtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgt 256  Q
    ||||||||||||||| | | || |||||| |||||| || |||||||||||||||||| ||||||||| ||||    
T  24924634 gtttttggtaaacaagatgactagttttgattattataagcatgatcaaaccagaaatactaggacatattgt 24924706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 16403932 - 16403976
Alignment:
Q  324 cccatggtgcaagtccaccaatctaaaataccacacttcaactca 368  Q
    ||||||||||||| |||||||||||| | ||||||||| ||||||    
T  16403932 cccatggtgcaagaccaccaatctaagagaccacactttaactca 16403976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 16674917 - 16674949
Alignment:
Q  227 gatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||| ||||||||||||||||||||||||    
T  16674917 gatcaaacaagaaattctaggacatgttgtgca 16674949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 16142319 - 16142406
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  16142319 tgtttaccggtgtttttggtaaacaataagggctggttttggttattacaaacatgatcaaactagaaatcctaggacatgttgtgca 16142406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 14767169 - 14767088
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||||||||||||  |||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  14767169 gtgtttttggtaaacaataagggctagttttgattattacaagcacgatcaaaccagaaattctaggacatgttgtgcattt 14767088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 18713496 - 18713567
Alignment:
Q  186 tttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttg 255  Q
    ||||||||||||||  ||||||||||||| ||||||||| || ||||||||||||||| || ||||||||||    
T  18713496 tttttggtaaacaagaagggctggttttgattattacaagcaagatcaaaccagaaatccttggacatgttg 18713567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 242362 - 242288
Alignment:
Q  185 gtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||||||||| |||| || ||||||||||||||| || ||||||||||| ||| |||||||||||||||||    
T  242362 gtttttggtaaacaacagggttgattttggttattacaagcaagatcaaaccag-aatcctaggacatgttgtgca 242288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 562
Target Start/End: Complemental strand, 12972568 - 12972472
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaat 562  Q
    |||||||| ||||||||| ||| ||||||| || || |||| |||||||||| | | |||||||| || || ||| |||||||||||| ||||||||    
T  12972568 gtgatgatagaacatcatttgatatttttggctatgtttttagttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaat 12972472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 17296537 - 17296459
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  ||| || |||||||||||||||| || |||||||| |||||| |||  ||||||||||||    
T  17296537 gtgtttttggtaaacaagaaggtctagttttggttattacaatcaggatcaaacaagaaatcctacaacatgttgtgca 17296459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 17524643 - 17524733
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  ||||||||||||||| |  ||||||||||||||||||||||| || |||| |||  ||||| ||| ||||||||||| ||||    
T  17524643 tgtttaccggtgtttttggtaaaccacgagggctggttttggttattacaagcaggatctaacttgaaatcctaagacatgttgtgaattt 17524733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 17948250 - 17948160
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||||||   |||||||||||| |||||||||  |  ||| ||| |||||| ||||||||||||||||||||    
T  17948250 tgtttaccagtgtttttggtaaacaatacgggctggttttgattattacaagaagtatccaacaagaaatcctaggacatgttgtgcattt 17948160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 10163558 - 10163506
Alignment:
Q  207 gttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||| ||||||||| || ||||||||||||||||||| || ||||||||||    
T  10163558 gttttgattattacaagcaggatcaaaccagaaattctaagatatgttgtgca 10163506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 4031341 - 4031290
Alignment:
Q  208 ttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||| ||| ||||| |||||||||||||||||| |||| ||||||||||||    
T  4031341 ttttgattactacaagcatgatcaaaccagaaatcctagaacatgttgtgca 4031290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 17352546 - 17352621
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctagg 247  Q
    ||||||||  || |||||||||||||| ||| || |||||  ||||||||||||||||||||| |||||| |||||    
T  17352546 ttgtttacctgtatttttggtaaacaataggactagttttaattattacaaacatgatcaaactagaaatcctagg 17352621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 28712142 - 28712228
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaaaggg-ctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||  ||||||||||||||||| | | || |||| | ||||||||  || ||||||||||||||| |||||||||||||||||    
T  28712142 ttgtttaccggtgtttttggtaaacaacgagactagttt-gattattacaggcaagatcaaaccagaaatcctaggacatgttgtgca 28712228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 13003161 - 13003075
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||  ||| ||||||||||| | |||||| |||||| ||||||||| ||  ||||||||||||||  |||||| |||||||||    
T  13003161 tgtttaccggtgattttggtaaactacagggctagttttgattattacaagcagaatcaaaccagaaatcttaggacctgttgtgca 13003075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 16793078 - 16793132
Alignment:
Q  205 tggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||| ||  ||||||| ||||| ||||||||| ||||||||    
T  16793078 tggttttggttattacaagcagaatcaaacaagaaagtctaggacacgttgtgca 16793132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 1233 - 1173
Alignment:
Q  199 aagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  1233 aagggctggttttggttattacaagcaagatcaaaccagaaattctaggacatgttgtgca 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 10235813 - 10235900
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||  ||||||||||||||||| | | || |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  10235813 ttgtttactagtgtttttggtaaacaataagactagttttgattattacaagcatgatcaaaccagaaattctaggacatgttgtgca 10235900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 31533355 - 31533277
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  ||||||||||||||||||||||| || |||| |||| ||||| |||||||||||||||||    
T  31533355 gtgtttttggtaaacaagaagggctggttttggttattacaagcaggatcgaacccgaaatcctaggacatgttgtgca 31533277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 23355434 - 23355509
Alignment:
Q  184 tgtttttggtaaacaaag--ggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtg 257  Q
    |||||||||||||||| |  || ||||||||||||||||||  |||||||||| |||||| |||||||||||||||    
T  23355434 tgtttttggtaaacaatgacggatggttttggttattacaagaatgatcaaactagaaatcctaggacatgttgtg 23355509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 469 - 592
Target Start/End: Original strand, 26070409 - 26070531
Alignment:
Q  469 atgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcctttg 568  Q
    |||||||||||||||||||  |||||| || || |||| |||||||||| | | ||| |||| || || ||| |||||||||||| ||||||||| ||||    
T  26070409 atgatggaacatcatatgat-tttttggctatgtttttagttattttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttg 26070507  T
Q  569 atgaacattttgtattattttcat 592  Q
    | ||| |||| ||||| |||||||    
T  26070508 aggaaaatttagtattgttttcat 26070531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 17167639 - 17167561
Alignment:
Q  186 tttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    ||||||||||||||   |||||| ||||| ||||||||| || ||| |||||| |||| ||||||||||||||||||||    
T  17167639 tttttggtaaacaatacgggctgattttgattattacaagcaggataaaaccataaatcctaggacatgttgtgcattt 17167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 24878128 - 24878217
Alignment:
Q  172 gttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||  || ||||||||||||||  | || |||||||  ||||||||| || ||||||| ||||||| |||||||||||||||||    
T  24878128 gttgtttaccggtatttttggtaaacaagaaaggttggttttaattattacaagcaggatcaaagcagaaatcctaggacatgttgtgca 24878217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 21390454 - 21390522
Alignment:
Q  192 gtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||| ||||||||||||| |||| ||||  |||||| |||||||||| ||||| |||||||||||    
T  21390454 gtaaacaagagggctggttttgtttatgacaagaatgatctaaccagaaatcctagggcatgttgtgca 21390522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 24411111 - 24411190
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggaca 250  Q
    ||||||||  |||||||||||||||||  |||| || ||||||||||||||| |  ||||||||||||||| ||| ||||    
T  24411111 ttgtttaccggtgtttttggtaaacaagaagggttgattttggttattacaagcgggatcaaaccagaaatcctatgaca 24411190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 19924353 - 19924263
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||||||   ||||||||||   ||||||||| || |||||| | | |||| ||||||||||||||||||||    
T  19924353 tgtttacctgtgtttttggtaaacaatatgggctggtttgaattattacaagcaggatcaacctaaaaatcctaggacatgttgtgcattt 19924263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 22847826 - 22847877
Alignment:
Q  208 ttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||| |||||||||| ||||||||||| |||||| ||||||||| |||||||    
T  22847826 tttttgttattacaagcatgatcaaactagaaatcctaggacattttgtgca 22847877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 23379552 - 23379475
Alignment:
Q  184 tgtttttggtaaaca--aagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||  | ||||| |||||| ||||||| | || |||||||||| | |||||||||||| |||||||    
T  23379552 tgtttttggtaaacattacgggctagttttgattattacgagcaggatcaaaccaaagattctaggacatattgtgca 23379475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 24663360 - 24663414
Alignment:
Q  205 tggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||| || |||||||| ||||||  ||||||||| ||||||    
T  24663360 tggttttggttattacaagcacgatcaaacaagaaatcttaggacatgatgtgca 24663414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 28619543 - 28619498
Alignment:
Q  214 ttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||| || |||||||||||||||  ||||||||||||||||    
T  28619543 ttattacaagcaggatcaaaccagaaatcataggacatgttgtgca 28619498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 20064760 - 20064728
Alignment:
Q  231 aaaccagaaattctaggacatgttgtgcatttt 263  Q
    |||||||| ||||||||||||||||||||||||    
T  20064760 aaaccagatattctaggacatgttgtgcatttt 20064728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 21166465 - 21166433
Alignment:
Q  227 gatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||| ||||||||||||||||||||||||    
T  21166465 gatcaaactagaaattctaggacatgttgtgca 21166433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 25667589 - 25667529
Alignment:
Q  199 aagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||||||||| || |||||||| | ||||  |||||  |||||||||    
T  25667589 aagggctggttttggttattacaagcaggatcaaactaaaaatcttaggagctgttgtgca 25667529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 8737533 - 8737455
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  ||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  8737533 gtgtttttggtaaacaataagggctggtttttattattacaagcatgatcaaactagaaattctaggacatgttgtgca 8737455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 9089771 - 9089693
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  ||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  9089771 gtgtttttggtaaacaataagggctggtttttattattacaagcatgatcaaactagaaattctaggacatgttgtgca 9089693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 592
Target Start/End: Complemental strand, 21829315 - 21829190
Alignment:
Q  467 tgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcctt 566  Q
    ||||||||| | ||||||||| ||||||| || |  ||||  ||||||| | | | ||||||||||| || ||| |||||||||||| ||||||||  ||    
T  21829315 tgatgatgggatatcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtt 21829216  T
Q  567 tgatgaacattttgtattattttcat 592  Q
    ||| ||||||||||||||||||||||    
T  21829215 tgaggaacattttgtattattttcat 21829190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 14132430 - 14132343
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||  |||||||||||||||||  | ||||||||||||||||||||| || |||||||| |||||| | |||||||||||||||    
T  14132430 tgtttaccggtgtttttggtaaacaagaaaggctggttttggttattacaagcaggatcaaactagaaatccaaggacatgttgtgca 14132343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 4766015 - 4765957
Alignment:
Q  205 tggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcatttt 263  Q
    |||||||||||||||||| || || |||||||||||| |||||||||||||||||||||    
T  4766015 tggttttggttattacaagcaggaacaaaccagaaatcctaggacatgttgtgcatttt 4765957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 4832884 - 4832795
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaaag-ggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    ||||||||| ||||||||||||||||| | || | ||||||||||||||||  | |||||||||| |||| | ||||||||||||||||||    
T  4832884 ttgtttacg-gtgtttttggtaaacaacgagggttgttttggttattacaagtaggatcaaaccaaaaatcccaggacatgttgtgcattt 4832795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 12144761 - 12144843
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgtt 254  Q
    ||||||||  ||||||||||||||||| | |||||||||||||||||||||  | ||| ||||||||||| ||| ||||||||    
T  12144761 ttgtttaccggtgtttttggtaaacaataaggctggttttggttattacaagtaggattaaaccagaaatcctacgacatgtt 12144843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 15987373 - 15987425
Alignment:
Q  207 gttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||||||||||  | |||||||| ||||||||||||||||||||||||    
T  15987373 gttttggttattacaagtaggatcaaactagaaattctaggacatgttgtgca 15987425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 27718316 - 27718238
Alignment:
Q  183 gtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||||||||||||  ||  || ||||| ||||||||| |||||||||| ||||||||||  |||||||||||||    
T  27718316 gtgtttttggtaaacaaaaaggattgattttgattattacaagcatgatcaaatcagaaattcttagacatgttgtgca 27718238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 23378268 - 23378355
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||||||   |||||||||||| |||||||||||| | ||||||||||    ||| ||||||||||||||||    
T  23378268 tgtttaccagtgtttttggtaaacaatacgggctggttttgattattacaaacagggtcaaaccaga---cctatgacatgttgtgcattt 23378355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 53589447 - 53589370
Alignment:
Q  183 gtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||| || ||| || |||||| |||||||||  | ||||||||||||||| ||||||||| |||||||    
T  53589447 gtgtttttggtaaataataggactagttttgattattacaagtaggatcaaaccagaaatcctaggacattttgtgca 53589370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 27304770 - 27304680
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||| ||  ||||||| | ||| ||||| ||| || |||||||||| |||| ||| ||||||||||||||||    
T  27304770 tgtttactggtgtttttggtaaataataagggctgatattgattattgcaagcaggatcaaaccaaaaatcctatgacatgttgtgcattt 27304680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 25320968 - 25321042
Alignment:
Q  186 tttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||| | | || |||||| ||||||||| |||| |||||||| ||||  ||||||||||||||||    
T  25320968 tttttggtaaacaatatgactagttttgattattacaagcatggtcaaaccaaaaatcgtaggacatgttgtgca 25321042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 5495372 - 5495404
Alignment:
Q  227 gatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||||||||| |||||||||||||||||    
T  5495372 gatcaaaccagaaatcctaggacatgttgtgca 5495404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 27123983 - 27123898
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgt 256  Q
    ||||||||  |||||||||||||||||  |||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  27123983 ttgtttaccggtgtttttggtaaacaagaagggatggttttggttattacaagcatgatcaaatcagaaatcctaggacatgttgt 27123898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 9217939 - 9218019
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcatt 261  Q
    |||||||||||||||||  |||||||||||||||||| || | |||||||||||||||||| ||| ||||| |||||||||    
T  9217939 gtgtttttggtaaacaataagggctggttttggttataaccagcatgatcaaaccagaaatcctatgacatattgtgcatt 9218019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 12669163 - 12669073
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcatt 261  Q
    ||||||||  |||||||||||||||||   |||||||||||| ||||||||| || |||||||||||||||  ||| ||||||||||||||    
T  12669163 ttgtttaccggtgtttttggtaaacaatacgggctggttttgattattacaagcaggatcaaaccagaaatcatagaacatgttgtgcatt 12669073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 24681132 - 24681039
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattttt 264  Q
    ||||||||  |||||||||| ||||||  ||||||||||||| ||||||||| ||  |||||||||||||| ||| ||||||||||| ||||||    
T  24681132 ttgtttaccggtgtttttggaaaacaagaagggctggttttgattattacaagcagaatcaaaccagaaatcctatgacatgttgtgaattttt 24681039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 13109976 - 13110054
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||| |||||||  ||||||| |||||||||||||||  |  |||||||||||||| |||||||||||||||||    
T  13109976 gtgtttttgataaacaataagggctgattttggttattacaagtagcatcaaaccagaaatcctaggacatgttgtgca 13110054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 18672489 - 18672411
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||| |||||||  |||| ||||||| |||||||||| ||  |||||| |||||||||||||||||||||||||    
T  18672489 gtgtttttgataaacaataagggttggttttagttattacaagcagcatcaaagcagaaattctaggacatgttgtgca 18672411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 25094841 - 25094919
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||| ||||||||  |||| |||||| | ||||||||| || ||||||||||||||||||||| |||||||||||    
T  25094841 gtgtttttagtaaacaagaagggttggtttagattattacaagcaggatcaaaccagaaattctagggcatgttgtgca 25094919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 592
Target Start/End: Original strand, 10866919 - 10867045
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcct 565  Q
    |||||||||||||||||||||| ||||||   | ||||||| |||||||||| |   || ||||| || || ||| |||||||||| | ||||||||  |    
T  10866919 gtgatgatggaacatcatatgatattttttggtatgattttagttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggt 10867018  T
Q  566 ttgatgaacattttgtattattttcat 592  Q
    |||| ||| |||||||||| |||||||    
T  10867019 ttgaggaatattttgtattgttttcat 10867045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 9286714 - 9286641
Alignment:
Q  182 cgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgt 253  Q
    ||||||||||||||||||  |||| || ||||| ||||| ||| || ||||||||||||||||||| |||||||    
T  9286714 cgtgtttttggtaaacaataagggttgattttgattattgcaagcaagatcaaaccagaaattctaagacatgt 9286641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 10600519 - 10600443
Alignment:
Q  184 tgtttttggtaaacaa--agggctggtttt-ggttattacaaacatgatcaaaccagaaattctaggacatgttgtg 257  Q
    ||||||||||||||||  || ||||||||| ||||||||||| |||||||| | |||||||  ||||||||||||||    
T  10600519 tgtttttggtaaacaagaagtgctggtttttggttattacaagcatgatcatagcagaaatcgtaggacatgttgtg 10600443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22713984 - 22713908
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtg 257  Q
    |||||||||| ||||||  ||||||||||||  ||||||||| || ||||||||||||||  |||| ||||||||||    
T  22713984 gtgtttttggcaaacaagaagggctggtttttattattacaagcaggatcaaaccagaaaccctagaacatgttgtg 22713908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 22450403 - 22450315
Alignment:
Q  172 gttgtttacgcgtgtttttggtaaac-aaagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||  ||||||||||||||| ||||| || |||||| ||||||||| || |||||||||| |||| ||  |||||||| ||||    
T  22450403 gttgtttaccggtgtttttggtaaacaaaaggactagttttgattattacaagcaagatcaaaccataaatcctgtgacatgttatgca 22450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 533
Target Start/End: Complemental strand, 30851283 - 30851216
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaa 533  Q
    ||||||||||||| |||||||| ||||||| || || |||| |||||||||| ||  |||||||||||    
T  30851283 gtgatgatggaacgtcatatgatatttttggctatgtttttagttattttctttatatttgaaggaaa 30851216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 19709824 - 19709738
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||  ||||||||||||||||| | | ||  ||||| ||||| ||| || |||||||||| |||| |||||||||||||||||    
T  19709824 tgtttaccggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgca 19709738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 51949 - 51871
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  |||| ||||||| |||||||||| || ||||||| |||||||||||||||||||||||||    
T  51949 gtgtttttggtaaacaagaagggatggttttagttattacaagcaggatcaaatcagaaattctaggacatgttgtgca 51871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 33556 - 33495
Alignment:
Q  198 aaagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||| ||||||| |||||||||| || ||||||||||||||| ||| |||||||||||||    
T  33556 aaagggttggtttttgttattacaagcaggatcaaaccagaaatcctatgacatgttgtgca 33495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 22608189 - 22608130
Alignment:
Q  203 gctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22608189 gctggtttcgattattacaaacatgatcaaaccagaaatcctaggacatgttgtgcattt 22608130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 25018428 - 25018499
Alignment:
Q  186 tttttggtaaacaaagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||| ||||||||  |||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  25018428 ttttttgtaaacaa--ggctagttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgca 25018499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 36572044 - 36571963
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||||||||||||  ||||||| ||||| ||||| ||| ||  ||||||||| |||||||||||||||||||||||||    
T  36572044 gtgtttttggtaaacaataagggctgattttgattattgcaagcagaatcaaaccataaattctaggacatgttgtgcattt 36571963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 17615060 - 17615120
Alignment:
Q  199 aagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||  ||||||||| || ||||||||||||||| |||||||||||||||||    
T  17615060 aagggctggttttaattattacaagcaggatcaaaccagaaatcctaggacatgttgtgca 17615120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 33102838 - 33102897
Alignment:
Q  203 gctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||||| ||||||||| || |||||||||||||||  |||||||||||||||||||    
T  33102838 gctggttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgcattt 33102897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 16083456 - 16083508
Alignment:
Q  207 gttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||| |||||||||||| ||||||||||||||  |||||||||||| ||||    
T  16083456 gttttgattattacaaacaggatcaaaccagaaaccctaggacatgttatgca 16083508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 22785406 - 22785332
Alignment:
Q  186 tttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||| | || | |||||| |||||||||  | ||||||| |||||||||||| ||||||||||||    
T  22785406 tttttggtaaacaataaggttagttttgattattacaagtaagatcaaatcagaaattctagaacatgttgtgca 22785332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 592
Target Start/End: Original strand, 26101988 - 26102114
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcct 565  Q
    ||||||||||| |||||||||| ||||| | |  || |||| |||||||||| | | |||||| | || || ||| |||||||||| | || |||||  |    
T  26101988 gtgatgatggagcatcatatgatattttaggcgatgtttttagttattttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggt 26102087  T
Q  566 ttgatgaacattttgtattattttcat 592  Q
    |||| || ||||||||||| |||||||    
T  26102088 ttgaggaccattttgtattgttttcat 26102114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 592
Target Start/End: Original strand, 18795169 - 18795238
Alignment:
Q  523 tttgaaggaaattaggagatcatttagaggaattgtcaatcctttgatgaacattttgtattattttcat 592  Q
    ||||||||||| || ||| |||||||||||| || |||||  ||||| |||||||||||||  |||||||    
T  18795169 tttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgttttcat 18795238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 20866051 - 20866095
Alignment:
Q  202 ggctggttttggttattacaaacatgatcaaaccagaaattctag 246  Q
    ||||||||||| ||||||||| ||  |||||||||||||||||||    
T  20866051 ggctggttttgattattacaatcagtatcaaaccagaaattctag 20866095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 4321 - 4411
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||||||  |||| |||||||| ||||||||| || ||||||||||||||| ||||||| ||||||| ||||    
T  4321 tgtttaccggtgtttttggtaaacaataagggatggttttgattattacaagcaggatcaaaccagaaatcctaggacgtgttgtggattt 4411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 25520767 - 25520677
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcatt 261  Q
    ||||||||  |||||||||||||||||  ||||  ||||||||||||||||| || |||||||||  |||| |||||||||||||||||||    
T  25520767 ttgtttaccggtgtttttggtaaacaacaagggtaggttttggttattacaagcaggatcaaacccaaaatcctaggacatgttgtgcatt 25520677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 23388929 - 23388981
Alignment:
Q  207 gttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  23388929 gttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgca 23388981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 24543641 - 24543732
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    ||||||||  |||||||||||||||||   |||||| ||||| ||||||||| ||||||||||| ||||||| ||||| || ||||||||||    
T  24543641 ttgtttaccggtgtttttggtaaacaatacgggctgattttgattattacaagcatgatcaaactagaaattttaggatatattgtgcattt 24543732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 17162341 - 17162254
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||  ||||||||||||||||| ||   |||||||| ||||||||| || ||||||||||||||| ||| |||||||||||||    
T  17162341 ttgtttaccagtgtttttggtaaacaatagaattggttttgattattacaagcaggatcaaaccagaaatcctatgacatgttgtgca 17162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 533
Target Start/End: Original strand, 19540969 - 19541035
Alignment:
Q  467 tgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaa 533  Q
    ||||||||||||||||||||| |||||||||| || |||| |||||||||| | | |||||||||||    
T  19540969 tgatgatggaacatcatatgagatttttgcctatgtttttagttattttctttgcatttgaaggaaa 19541035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 17636482 - 17636569
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||  |||||||||||||||||  ||||||| ||| ||||||||||| || ||||||||||||||| |||||| || |||||||    
T  17636482 ttgtttactggtgtttttggtaaacaagaagggctgattt-ggttattacaagcaggatcaaaccagaaatcctaggatatattgtgca 17636569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 18929103 - 18929183
Alignment:
Q  184 tgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    ||||||||||||||||   |||||||||||| ||||||| | || || ||||||||| || ||||||||||||||||||||    
T  18929103 tgtttttggtaaacaatacgggctggttttgattattacgagcaggaccaaaccagagatcctaggacatgttgtgcattt 18929183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 20515886 - 20515802
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtg 257  Q
    |||||||  ||||||||||||||||| | | || |||||| ||||||||| || |||||||||||||||  ||||||||||||||    
T  20515886 tgtttaccggtgtttttggtaaacaataagactagttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtg 20515802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29891616 - 29891564
Alignment:
Q  205 tggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtg 257  Q
    |||||||||||||||||| || |||||||||| |||| |||||||||||||||    
T  29891616 tggttttggttattacaagcaggatcaaaccataaatcctaggacatgttgtg 29891564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 17676351 - 17676427
Alignment:
Q  184 tgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||||||||||  ||||||| ||| ||||||||||| || ||||||||||||||| |||||| || |||||||    
T  17676351 tgtttttggtaaacaagaagggctgattt-ggttattacaagcaggatcaaaccagaaatcctaggatatattgtgca 17676427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 32890171 - 32890259
Alignment:
Q  173 ttgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||  |||||||||||||| ||  |||| || ||||||||||||||| ||  ||||||||| |||| ||| |||||||||||||    
T  32890171 ttgtttaccggtgtttttggtaaataagaagggttgattttggttattacaagcagaatcaaaccataaatcctaagacatgttgtgca 32890259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 31404429 - 31404342
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||  |||||||||||||||||  |||| || |||| | |||||||| || || ||||||| |||| |||||||||||||||||    
T  31404429 tgtttaccagtgtttttggtaaacaagaagggttgatttttgctattacaagcaggaccaaaccaaaaatcctaggacatgttgtgca 31404342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 592
Target Start/End: Original strand, 24047328 - 24047439
Alignment:
Q  481 catatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcctttgatgaacattttg 580  Q
    ||||||| ||||| | || || |||| |||||||| | | | ||||||||||| || ||| | |||||||| ||||||||||  ||| | ||||||||||    
T  24047328 catatgatattttaggctatgtttttagttattttatttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttg 24047427  T
Q  581 tattattttcat 592  Q
    |||| |||||||    
T  24047428 tattgttttcat 24047439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 26650696 - 26650785
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||||||   |||||||||||| ||||||  | ||||| ||| ||||| || ||||||||||||||||||||    
T  26650696 tgtttaccggtgtttttggtaaacaatacgggctggttttgattattatgagcatgaccaa-ccagagatcctaggacatgttgtgcattt 26650785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 589
Target Start/End: Complemental strand, 32276697 - 32276574
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcct 565  Q
    ||||||| |||||||||||||  | |||||  | || |||| |||||||||| | | ||||||||||| || ||| ||||||| ||||  |||||||  |    
T  32276697 gtgatgaaggaacatcatatggtacttttggatatgtttttagttattttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggt 32276598  T
Q  566 ttgatgaacattttgtattatttt 589  Q
    |||| |||||||||| ||| ||||    
T  32276597 ttgaagaacattttgcattgtttt 32276574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 17152160 - 17152210
Alignment:
Q  542 tcatttagaggaattgtcaatcctttgatgaacattttgtattattttcat 592  Q
    |||||||||||| ||||||||  ||||| ||| ||||||||||||||||||    
T  17152160 tcatttagaggagttgtcaatggtttgaggaatattttgtattattttcat 17152210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 13370182 - 13370227
Alignment:
Q  214 ttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||||| || ||||||| |||||||||||| ||||||||||||    
T  13370182 ttattacaagcaggatcaaatcagaaattctagaacatgttgtgca 13370227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 376538 - 376447
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaaa---gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  |||||||||||||||||    |||||||||||| |||||||||  | ||||||||||||||| ||||||||||||||| ||||    
T  376538 tgtttaccagtgtttttggtaaacaataaggggctggttttgattattacaaggaggatcaaaccagaaatcctaggacatgttgtgaattt 376447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 20323 - 20401
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||| |||||||||  |||| |||||||||||||||||| || |||||||||||||||  | ||||||||||||||    
T  20323 gtgttttgggtaaacaagaagggatggttttggttattacaagcaggatcaaaccagaaatcttgggacatgttgtgca 20401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 15065 - 15155
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcattt 262  Q
    |||||||  ||||||| |||||||||  |||| |||||||| ||||||||| ||||||||||||| |||| ||||||| ||||||| ||||    
T  15065 tgtttaccggtgttttgggtaaacaataagggatggttttgattattacaagcatgatcaaaccacaaatcctaggacgtgttgtggattt 15155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 18084069 - 18084147
Alignment:
Q  183 gtgtttttggtaaacaa--agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||||  |||||||||||||||||||||||  | |||||||| |||||| |||  ||||||||||||    
T  18084069 gtgtttttggtaaacaagaagggctggttttggttattacaagaaggatcaaactagaaatcctaatacatgttgtgca 18084147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 18046259 - 18046317
Alignment:
Q  201 gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||| ||||||||||||||| || |||||||| |||||| |||||||||||||||||    
T  18046259 gggctgattttggttattacaagcaggatcaaactagaaatactaggacatgttgtgca 18046317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 41131701 - 41131776
Alignment:
Q  186 tttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||  ||| |||||||| ||||||||| || |||||||  ||||||||||||| ||||||||||    
T  41131701 tttttggtaaacaaaaagggttggttttgattattacaagcacgatcaaattagaaattctaggatatgttgtgca 41131776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 7525063 - 7524993
Alignment:
Q  183 gtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatg 252  Q
    ||||||||||||||||| ||| ||| |||||||||||||||  | ||||||||||||||| ||| ||||||    
T  7525063 gtgtttttggtaaacaagaggactgattttggttattacaagtaggatcaaaccagaaatcctaagacatg 7524993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 14987429 - 14987347
Alignment:
Q  183 gtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcatttt 263  Q
    |||||||||||||||||   ||| |||||||| ||||||| | ||  | ||||||||| || |||||||||||||||||||||    
T  14987429 gtgtttttggtaaacaatacgggttggttttgattattacgagcagtaccaaaccagagatcctaggacatgttgtgcatttt 14987347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 15417040 - 15416958
Alignment:
Q  183 gtgtttttggtaaacaaa--gggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcatttt 263  Q
    |||||||||||||||||   ||| |||||||| ||||||| | ||  | ||||||||| || |||||||||||||||||||||    
T  15417040 gtgtttttggtaaacaatacgggttggttttgattattacgagcagtaccaaaccagagatcctaggacatgttgtgcatttt 15416958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 7948317 - 7948252
Alignment:
Q  186 tttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggaca 250  Q
    |||||||||||||| ||| || || ||| |||||||||||| |||||||||| |||| ||||||||    
T  7948317 tttttggtaaacaataggactagtcttgattattacaaacaggatcaaaccataaatcctaggaca 7948252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 12468696 - 12468773
Alignment:
Q  183 gtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    ||||||| ||||||||| | | || |||||| ||||||||| |||| |||| |||||||| |||||||||||| ||||    
T  12468696 gtgttttgggtaaacaatatgactagttttgattattacaagcatggtcaatccagaaatcctaggacatgttatgca 12468773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 3743232 - 3743325
Alignment:
Q  174 tgtttacgcgtgtttttggtaaacaaaggg--ctggttttggttattacaaacatgatcaaaccagaaa---ttctaggacatgttgtgcattt 262  Q
    |||||||  ||||||||||||||| | |||  | ||||||||||||||| | || ||||||||||||||   | ||||||||||| ||||||||    
T  3743232 tgtttaccggtgtttttggtaaactatgggggccggttttggttattactagcaagatcaaaccagaaatattcctaggacatgtagtgcattt 3743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 466 - 592
Target Start/End: Complemental strand, 11881 - 11755
Alignment:
Q  466 gtgatgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaagg-aaattaggagatcatttagaggaattgtcaatcc 564  Q
    |||||||| ||||||||||||| ||||| | || || |||| |||||||| | | | |||||||| ||| ||| || |||||||||||| ||||||||      
T  11881 gtgatgattgaacatcatatgatattttaggctatgtttttagttattttatttgcatttgaaggcaaaatagaag-tcatttagaggagttgtcaatga 11783  T
Q  565 tttgatgaacattttgtattattttcat 592  Q
    |||||||||| ||||||||  |||||||    
T  11782 tttgatgaactttttgtatagttttcat 11755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 592
Target Start/End: Original strand, 1378 - 1500
Alignment:
Q  469 atgatggaacatcatatgacatttttgcctctgattttggttattttctctacgtttgaaggaaattaggagatcatttagaggaattgtcaatcctttg 568  Q
    ||||||||||||||||||| ||||||  || || |||  |||||||||| | | | | ||||||| || ||| |||||||||||| ||||||||  ||||    
T  1378 atgatggaacatcatatgatattttttgctatg-tttgagttattttcttttcatcttaaggaaaataagaggtcatttagaggagttgtcaatattttg 1476  T
Q  569 atgaacattttgtattattttcat 592  Q
    | || ||||||||||| |||||||    
T  1477 aggagcattttgtattgttttcat 1500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 22777 - 22855
Alignment:
Q  183 gtgtttttggtaaacaa-agggctggttttggttattacaaacatgatcaaaccagaaattctagga-catgttgtgca 259  Q
    ||||||||||||||||| |||| | |||||||||||| |||  | |||||||| ||||||||||||| |||||||||||    
T  22777 gtgtttttggtaaacaatagggttagttttggttattgcaagaaggatcaaactagaaattctaggagcatgttgtgca 22855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 39220 - 39167
Alignment:
Q  207 gttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgcat 260  Q
    |||||||||||||||| || |||||||| ||||||  |||||||||||||||||    
T  39220 gttttggttattacaagcaggatcaaactagaaatcttaggacatgttgtgcat 39167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 12913 - 12990
Alignment:
Q  184 tgtttttggtaaaca--aagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtgca 259  Q
    |||||||||||||||  | ||||| |||||| ||||||| | || |||||||||| | |||||||||||| |||||||    
T  12913 tgtttttggtaaacattacgggctagttttgattattacgagcaggatcaaaccaaagattctaggacatattgtgca 12990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 192037 - 191979
Alignment:
Q  199 aagggctggttttggttattacaaacatgatcaaaccagaaattctaggacatgttgtg 257  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||  || |||||||||||    
T  192037 aagggctagttttggttattataagcatgatcaaactagaaatcttacgacatgttgtg 191979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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