View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_5 (Length: 595)
Name: NF11877_low_5
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 89 - 590
Target Start/End: Complemental strand, 18631066 - 18630569
Alignment:
| Q |
89 |
ttgttaatgataaattttgttccttctcatctcttgttttagctggccttaacttatttgcaccagatacttcaaattttatggtggt-aggtatgagaa |
187 |
Q |
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| T |
18631066 |
ttgttaatgataaattttgttccttctcatctcttgtttcagctggccttaacttatttgcaccagatacttcaatttttttgggggttaggtatgagaa |
18630967 |
T |
|
| Q |
188 |
tgaattgcagggtctgatcagtaacaaataataggacagttatttcaattttttccttcatattttcaacttacagcatcataaatttatccaaataaaa |
287 |
Q |
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| T |
18630966 |
tgaattgcagggtctgatcagtaacaa-taataggacagttatttcaattttttccttcatattttcaacttacagcatcataaatttatccaaataaaa |
18630868 |
T |
|
| Q |
288 |
aa-ttctagctatgaacctaaaa-ttgtagtttaagtccttcaaatttgacatcacaattttttctaacttgagacaaaagcttgaagaatttctacttt |
385 |
Q |
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| T |
18630867 |
aaattctagctatgaaccttaaagttgtagtttaagttctttaaatttgacatcacaattttt-ctatcttgagacaa--gcttgaagaatttctacttt |
18630771 |
T |
|
| Q |
386 |
ctaattggcctcatacatggaaaatgaattggaatttttatctgttttgaattcacacttcattttaaaagtcaaaataagcctgtgactaaaccacttc |
485 |
Q |
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| T |
18630770 |
ctactaggcc--atacatggaaaatgaattggaatttttatctgttttgaattcacacttcattttaaaagtcaaaataagcttgtgactaaaccacttc |
18630673 |
T |
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| Q |
486 |
agttattaacctttttaagtgtttattagggcgggttctacaatagaccactaatacttaaaacttatataacacctctcaaaaatagaagttcttggtc |
585 |
Q |
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| T |
18630672 |
agttattaacc-ttttaagtgtttattagggcgggttctacaatagaccactaatacttaaaacttatatgacacctctcaaaaatagaagttcttggtc |
18630574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 18213142 - 18213114
Alignment:
| Q |
53 |
gcacagatacgaacacgaacaccagacac |
81 |
Q |
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| T |
18213142 |
gcacagatacgaacacgaacaccagacac |
18213114 |
T |
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