View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_6 (Length: 563)
Name: NF11877_low_6
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 47134025 - 47133484
Alignment:
| Q |
1 |
agacaggttgaatgtcaattcgtgtatagctatgtgttgattgatagtaactttgtttttgttacaaatacacgacaagaataaagtttgagaggaaaat |
100 |
Q |
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| T |
47134025 |
agacaggttgaatgtcaattcgtgtatagctatgtgttgattgatagtaactttgtttttgttacaaatacacgacaagaataaagtttgagaggaaaat |
47133926 |
T |
|
| Q |
101 |
gtggcagcatattatatccttgcaaattaccaatcaatacttatagttatatccattaacttgaagattttggttcttttcaagcatatgatttcaatat |
200 |
Q |
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| T |
47133925 |
gtggcagcagatcatatccttgcaaattaccaatcaatacttata------tccattaacttgaagattttggttcttttcaagcatatgatttcaatat |
47133832 |
T |
|
| Q |
201 |
tggccattcattatcaaacttttattcctaagtatacgcaacatggataacgtacgggcttctttatttaatcttatctgttttaagaaaattaaataaa |
300 |
Q |
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| T |
47133831 |
tggccattcattatcaaacttttattcctaagtatacgtaacatggataacgtacgggcttctttatttaatcttatctgttttaagaaaattaaataaa |
47133732 |
T |
|
| Q |
301 |
actacaaattaaattgagagacttccataattgcagtgattttccccgaccgtattatctaatctaaagatccctgacacaatgcaagaattaatcaatt |
400 |
Q |
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| T |
47133731 |
actacaaattaaattgagagacttccataattgcagtgattttccccgaccgtattatttaatctaaagatccctg--acaatgcaagaattaatcaatt |
47133634 |
T |
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| Q |
401 |
agtagtataataatgcaacattggaatcttttcgctaatttgaatagccaaattacaattcgaaaatagtttatactcacaattcacaaatcacatggtt |
500 |
Q |
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| T |
47133633 |
agtagtataataatgcaacattggaatcttttcgctaatttgaatagccaaattacaattcgaaaatagtttatactcacaattcacagatcacatggtt |
47133534 |
T |
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| Q |
501 |
ttgctacattttctatt---tagtgtgaatgaatgattgaaaaatatatc |
547 |
Q |
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| T |
47133533 |
ttgctacattttctatttactagtgtgaatgaatgattgaaaaatatatc |
47133484 |
T |
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