View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11877_low_7 (Length: 504)
Name: NF11877_low_7
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11877_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 2283706 - 2284186
Alignment:
| Q |
17 |
aattataagtgtcggtgtcgtatccgtgtcgtctgatattaatatacgtctaattcaaggattatcttgcttcatagccatagagaattggatttgggaa |
116 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2283706 |
aattataagtgttggtgtcgtatccgtatcgtctgatattaatatacgtctaattcaaggattatcttgcttcatagctatagagaattggatttgggaa |
2283805 |
T |
|
| Q |
117 |
ttccattgcacctagtatactatagtatggttaatgttgtattagtatttaaaaatagaaatgatggttttttggaccctctcatattctttaggctatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2283806 |
ttccattgcacctagtatactatagtatggttaatgttgtattagtatttaaaaatagaaatgatggttttttggaccctctcatattctttaggctatg |
2283905 |
T |
|
| Q |
217 |
aaaagagcacgcatgatggtctgaaaaatcacatggggctgtatgccaactgggggagttgatgagtgtacaattagatagatgttacagaccagaccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2283906 |
aaaagagcacgcatgatggtctgaaaaatcacatggggctgtatgccaactgggggagttgatgagtgtacaattagatagatgttacagaccagaccac |
2284005 |
T |
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| Q |
317 |
cacgtgacttatcacaaatgtctcagaagacactttacctttaactagctacaaaccattttttacattaaagtagtagaatttggattggttggactat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284006 |
cacgtgacttatcacaaatgtctcagaagacactttacctttaactagctacaaaccattttttacattaaagtagtagaatttggattggttggactat |
2284105 |
T |
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| Q |
417 |
attagattagattacattacatttgacttgggctccacattccactatctttcat--tttgtcttgatttgatttcctatg |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2284106 |
attagattagattacattacatttgacttgggctccacattccactatctttcattctttgtcttgatttgatttcctatg |
2284186 |
T |
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