View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11877_low_8 (Length: 500)

Name: NF11877_low_8
Description: NF11877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11877_low_8
NF11877_low_8
[»] chr2 (16 HSPs)
chr2 (18-500)||(45039926-45040412)
chr2 (198-449)||(18061028-18061280)
chr2 (202-446)||(43559636-43559882)
chr2 (198-403)||(19870778-19870983)
chr2 (273-403)||(33226577-33226707)
chr2 (198-402)||(19865877-19866081)
chr2 (198-402)||(19875679-19875883)
chr2 (361-452)||(21017091-21017180)
chr2 (303-371)||(21017199-21017267)
chr2 (198-402)||(29686086-29686291)
chr2 (18-95)||(2632332-2632409)
chr2 (345-443)||(45516598-45516697)
chr2 (269-310)||(5608580-5608621)
chr2 (18-102)||(2486934-2487017)
chr2 (18-78)||(10349235-10349295)
chr2 (465-500)||(21017070-21017106)
[»] chr4 (12 HSPs)
chr4 (167-455)||(1100981-1101269)
chr4 (198-442)||(55250450-55250696)
chr4 (228-445)||(20447671-20447888)
chr4 (198-454)||(47668802-47669060)
chr4 (273-447)||(35466492-35466666)
chr4 (269-371)||(29857380-29857482)
chr4 (248-442)||(46964013-46964202)
chr4 (18-101)||(29744193-29744274)
chr4 (405-448)||(1838964-1839007)
chr4 (381-444)||(34027321-34027384)
chr4 (193-331)||(1838562-1838702)
chr4 (269-385)||(34027769-34027884)
[»] scaffold0406 (1 HSPs)
scaffold0406 (167-448)||(12551-12834)
[»] chr8 (13 HSPs)
chr8 (182-454)||(25246870-25247132)
chr8 (198-449)||(29190996-29191250)
chr8 (212-444)||(42664057-42664290)
chr8 (198-449)||(41877423-41877677)
chr8 (198-401)||(33828212-33828417)
chr8 (226-370)||(16366771-16366916)
chr8 (227-324)||(5697319-5697417)
chr8 (226-324)||(5676399-5676498)
chr8 (198-289)||(26534383-26534476)
chr8 (391-447)||(5730434-5730488)
chr8 (465-500)||(10207470-10207506)
chr8 (226-330)||(10207973-10208071)
chr8 (465-500)||(41877665-41877701)
[»] chr7 (8 HSPs)
chr7 (189-454)||(47235870-47236125)
chr7 (184-449)||(6036750-6037018)
chr7 (349-437)||(28086136-28086225)
chr7 (198-370)||(19910105-19910276)
chr7 (18-100)||(38074251-38074333)
chr7 (227-310)||(27705385-27705468)
chr7 (339-425)||(34821033-34821119)
chr7 (405-446)||(27704784-27704825)
[»] chr1 (10 HSPs)
chr1 (199-449)||(7093531-7093783)
chr1 (198-449)||(15962308-15962562)
chr1 (202-434)||(44508135-44508369)
chr1 (280-447)||(41335963-41336130)
chr1 (37-104)||(8818205-8818272)
chr1 (18-95)||(13645829-13645906)
chr1 (28-100)||(42790937-42791009)
chr1 (20-98)||(3840240-3840316)
chr1 (28-100)||(15348447-15348519)
chr1 (18-78)||(17120204-17120264)
[»] chr5 (8 HSPs)
chr5 (187-449)||(35951827-35952092)
chr5 (202-449)||(33140206-33140454)
chr5 (198-444)||(29790575-29790821)
chr5 (244-447)||(3707301-3707506)
chr5 (226-402)||(15471024-15471201)
chr5 (198-402)||(14144833-14145042)
chr5 (378-449)||(10262759-10262830)
chr5 (18-77)||(38139706-38139765)
[»] chr3 (18 HSPs)
chr3 (198-447)||(26445924-26446175)
chr3 (202-454)||(570950-571207)
chr3 (202-449)||(39650417-39650666)
chr3 (198-403)||(45483714-45483918)
chr3 (229-371)||(28521495-28521638)
chr3 (352-447)||(33087739-33087834)
chr3 (226-392)||(28146745-28146915)
chr3 (273-415)||(29952792-29952935)
chr3 (273-415)||(30001946-30002089)
chr3 (18-99)||(37228349-37228430)
chr3 (227-358)||(33087858-33087989)
chr3 (226-371)||(28050709-28050856)
chr3 (339-449)||(49754285-49754395)
chr3 (202-365)||(46091793-46091958)
chr3 (23-101)||(28476669-28476747)
chr3 (465-500)||(29952744-29952780)
chr3 (465-500)||(30001898-30001934)
chr3 (465-500)||(49754383-49754419)
[»] scaffold0005 (1 HSPs)
scaffold0005 (196-392)||(270242-270439)
[»] chr6 (5 HSPs)
chr6 (317-447)||(20902845-20902975)
chr6 (275-427)||(20921404-20921555)
chr6 (198-403)||(4017051-4017257)
chr6 (229-386)||(13325477-13325635)
chr6 (18-95)||(22295285-22295362)
[»] scaffold0257 (1 HSPs)
scaffold0257 (226-371)||(16436-16582)
[»] scaffold0258 (2 HSPs)
scaffold0258 (198-322)||(18108-18234)
scaffold0258 (391-447)||(17957-18013)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 45040412 - 45039926
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtgcctaaatcaggggcga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45040412 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtgcctaaatcaagggcga 45040313  T
Q  118 agggcttcaaatggatgggggtagca------accccaacagaaagnnnnnnnnncttgaatgattagcataagttttatatacaactaccccattaata 211  Q
    ||||||||||| |||||||| |||||      |||||||| ||||          |||||||||||||||||| ||||||||||||||||||||||||||    
T  45040312 agggcttcaaagggatgggg-tagcattggctaccccaacggaaa--taaaaaaacttgaatgattagcataaattttatatacaactaccccattaata 45040216  T
Q  212 tattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaattt 310  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45040215 tattatttagtcactccaaacaattttgttgtttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaattt 45040116  T
Q  311 gtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgt 410  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45040115 gtcttcttaaaactccatagagctcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgt 45040016  T
Q  411 gaatttattttacttatcgattaagtttaatatattagtgttcatnnnnnnntgttaatatattagttttaaaatatattttatttcttc 500  Q
    ||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||    
T  45040015 gaatttattttacttatcgattaagtttaatatattaatgttcataaaaaaatgttaatatattagttttaaaatatattttatttcttc 45039926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 198 - 449
Target Start/End: Complemental strand, 18061280 - 18061028
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    |||||||||||||||||||||| |  || ||||||||||| |||| |||||||||| ||  |||||| | || ||| ||||||||||||||||||| ||     
T  18061280 ctaccccattaatatattatttggttactccaaacaatttggttggttcaaagagagatgctattaaaataatattaataatctatttagtttagtgtcc 18061181  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatata 395  Q
    |||||  ||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||||| ||||| ||||| | || | ||||||| ||| ||||    
T  18061180 attatgaataaatttgacttcttaaaactctatatagctcaaattttataaataactattgttagcttttgttttctttgtcg-tgtttcattaagtata 18061082  T
Q  396 agtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    |||||||| |||||| |||| ||||||||||| ||||||||||||||| |||||    
T  18061081 agtaaaaattattgtaaattaattttacttattgattaagtttaatattttagt 18061028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 202 - 446
Target Start/End: Original strand, 43559636 - 43559882
Alignment:
Q  202 cccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaatta 299  Q
    |||||||||||||||||| || || |||||||||||||||| || ||||||| ||||| |||| |||| | | |||||||| |||||||||| |||||||    
T  43559636 cccattaatatattatttggctactccaaacaattttgttggtttaaagagagattattttaaaaaaatacttataatctacttagtttagtgtcaatta 43559735  T
Q  300 tagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagta 399  Q
    || ||||||||| ||| |||||||| |||| |   ||  ||||| |||||| ||||||||  |||||||||| ||||||| | |||| ||||||||||||    
T  43559736 taaataaatttgacttgttaaaacttcataaagtacaacttttataaataattattgttaaattttattttcttcgttgtcgcttcattaaatataagta 43559835  T
Q  400 aaaaatattgtgaatttattttacttatcgattaagtttaatatatt 446  Q
    |||  |||||  ||||||||||||||||  |||||||||||| ||||    
T  43559836 aaatctattgcaaatttattttacttattaattaagtttaatttatt 43559882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 198 - 403
Target Start/End: Original strand, 19870778 - 19870983
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaatttt-gttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatc 294  Q
    |||||||||| ||||||||||| || || |||||||||||| |||| || |||||   || |||| || |||| || |||||||||||||||||||||||    
T  19870778 ctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatc 19870877  T
Q  295 aattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatat 394  Q
    |||||||||||||||||    ||||||||| |||||| | ||  ||||| |||||| ||||||||  |||||||||| |   ||| |||||| |||||||    
T  19870878 aattatagataaatttg---acttaaaacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaatat 19870974  T
Q  395 aagtaaaaa 403  Q
    |||||||||    
T  19870975 aagtaaaaa 19870983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 273 - 403
Target Start/End: Complemental strand, 33226707 - 33226577
Alignment:
Q  273 ataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttca 372  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||| |||||||| ||||||   ||  ||||| |||||| ||||||||  ||||||||||     
T  33226707 ataatctatttagtttagtgtcaattataaataaatttgacttgttaaaacttcatagagtacaacttttataaataattattgttagattttattttct 33226608  T
Q  373 tcgttgttgtttcactaaatataagtaaaaa 403  Q
    || |||| |||||| ||||||||||||||||    
T  33226607 tcattgtcgtttcattaaatataagtaaaaa 33226577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 402
Target Start/End: Original strand, 19865877 - 19866081
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaatttt-gttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatc 294  Q
    |||||||||| ||||||||||| || || |||||||||||| |||| || |||||   || |||| || |||| || |||||||||||||||||||||||    
T  19865877 ctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatc 19865976  T
Q  295 aattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatat 394  Q
    |||||||||||||||||    ||||||||| |||||| | ||  ||||| |||||| ||||||||  |||||||||| |   ||| |||||| |||||||    
T  19865977 aattatagataaatttg---acttaaaacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaatat 19866073  T
Q  395 aagtaaaa 402  Q
    ||||||||    
T  19866074 aagtaaaa 19866081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 402
Target Start/End: Original strand, 19875679 - 19875883
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaatttt-gttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatc 294  Q
    |||||||||| ||||||||||| || || |||||||||||| |||| || |||||   || |||| || |||| || |||||||||||||||||||||||    
T  19875679 ctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatc 19875778  T
Q  295 aattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatat 394  Q
    |||||||||||||||||    ||||||||| |||||| | ||  ||||| |||||| ||||||||  |||||||||| |   ||| |||||| |||||||    
T  19875779 aattatagataaatttg---acttaaaacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaatat 19875875  T
Q  395 aagtaaaa 402  Q
    ||||||||    
T  19875876 aagtaaaa 19875883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 452
Target Start/End: Complemental strand, 21017180 - 21017091
Alignment:
Q  361 cttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagtgtt 452  Q
    ||||||||||| | |||| ||||||| ||||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21017180 cttttattttctttgttgctgtttcattaaata--agtaaaaattattgtgaatttattttacttattgattaagtttaatatattagtgtt 21017091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 21017267 - 21017199
Alignment:
Q  303 ataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttc 371  Q
    ||||||||| ||||||||||||||||| | ||||  ||||| ||||||||||||||| |||||||||||    
T  21017267 ataaatttgacttcttaaaactccatatatctcaacttttataaataactattgttagcttttattttc 21017199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 402
Target Start/End: Complemental strand, 29686291 - 29686086
Alignment:
Q  198 ctaccccattaatatattatttagccacc-caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    |||||||||||| ||||||||| | |||  |||| |||||||||| || ||| ||| || ||| ||  |||| |||||||||||||||| |||||| |||    
T  29686291 ctaccccattaagatattatttggtcacttcaaataattttgttggttaaaacagagatgatactataaaaatattgataatctatttattttagtgtca 29686192  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatata 395  Q
    ||||| |||||| ||| ||||| |||||||  || |  |||  ||||| || |||||||||||| | ||||||||| | ||||  ||||||  ||||||     
T  29686191 attatggataaaattgacttctaaaaactctttaaaggtcaacttttataagtaactattgttaac-tttattttctttgttgaagtttcatcaaatatg 29686093  T
Q  396 agtaaaa 402  Q
    |||||||    
T  29686092 agtaaaa 29686086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 2632332 - 2632409
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaa 95  Q
    ||||||||||||||||| ||||| |||||||||||| ||| ||||||| | || |||||||  |||| ||||||||||    
T  2632332 cattcattacattgaaattttgaaaattgacttttgcttcgttaaacttaccaattatttctattttagtcttcttaa 2632409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 45516598 - 45516697
Alignment:
Q  345 aaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaat-attgtgaatttattttacttatcgattaagtttaatat 443  Q
    |||||||||||||||  |||||||||| | ||| | |||||| |  ||||||||||||| | | |||||||||||||| ||||| |||||||||| ||||    
T  45516598 aaataactattgttagtttttattttctttgttttcgtttcatttgatataagtaaaaatttactgtgaatttatttttcttattgattaagtttgatat 45516697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 5608580 - 5608621
Alignment:
Q  269 attgataatctatttagtttagtatcaattatagataaattt 310  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  5608580 attgataatatatttagtttagtgtcaattatagataaattt 5608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2486934 - 2487017
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtgc 102  Q
    ||||||||||||||||||||| | |||||| ||||| ||||||||||| |||| ||||||    || |||||| |||||||||||    
T  2486934 cattcattacattgaaacttt-aaaattgatttttgcttcattaaactcatcaattatttatacttctgtctttttaacaagtgc 2487017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 10349235 - 10349295
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttc 78  Q
    ||||| ||| ||| ||||||| | |||||||||||||||||||||||| |||| |||||||    
T  10349235 cattctttaaatttaaactttaaaaattgacttttgattcattaaactcatcaattatttc 10349295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 21017106 - 21017070
Alignment:
Q  465 ttaatatattagt-tttaaaatatattttatttcttc 500  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21017106 ttaatatattagtgtttaaaatatattttatttcttc 21017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 167 - 455
Target Start/End: Complemental strand, 1101269 - 1100981
Alignment:
Q  167 cttgaatgattagcataagttttatatacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaaca 265  Q
    ||||||| |||||||||| ||||||||| | || ||||||||||||||||||| || || ||||||||||| |||| |||||||||||||||||||||||    
T  1101269 cttgaataattagcataaattttatatatagctcccccattaatatattatttggctactccaaacaatttagttggttcaaagagatattatattaaca 1101170  T
Q  266 aaaattgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttacctttt 365  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| || |||||    
T  1101169 aaaattgataatctatttagtttagtgtcaactatagataaatttgtcttcttaaaactcaatagagctcatcttttacaaataactattggtagctttt 1101070  T
Q  366 attttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagtgttcat 455  Q
    |||||| | |||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  1101069 attttcttagttgttgtttcattaaatataagtaaaaaatattgtgaattta-tttatttatcgattaagtttaatatattagtgttcat 1100981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 198 - 442
Target Start/End: Original strand, 55250450 - 55250696
Alignment:
Q  198 ctaccccattaatatattatttagccacc-caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    ||||||||||||||||||||||  | ||  ||||||||||||||| |||||||||  || || |||| |||| ||||||||||||||||||||||| |||    
T  55250450 ctaccccattaatatattatttgactacttcaaacaattttgttggttcaaagagggataatgttaataaaatattgataatctatttagtttagtgtca 55250549  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatata 395  Q
    |||||||||||||||| |||||||||| |  ||| | ||||  ||| | |||||| ||||||||  ||||| |||| |||||||| ||||| ||||||||    
T  55250550 attatagataaatttgacttcttaaaattttatatagctcaactttaataaataattattgttagattttagtttcttcgttgttatttcattaaatata 55250649  T
Q  396 agtaaaaaatattgtgaatttattttacttatcgattaagtttaata 442  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||||    
T  55250650 agtaaaaattattgtaaatttattttacttattgattaagtttaata 55250696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 228 - 445
Target Start/End: Complemental strand, 20447888 - 20447671
Alignment:
Q  228 aaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactcca 327  Q
    |||||||||||||| || ||||||  || || |||| ||||  |||| |||||||||  ||||| ||||||| ||||||||||| ||||||| |||  ||    
T  20447888 aaacaattttgttgattgaaagagggatgatgttaataaaatatgatgatctatttaagttagtgtcaattaaagataaatttgacttcttacaacatca 20447789  T
Q  328 tagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttat 427  Q
    |||| ||||  ||||| |||||| ||||||||  ||||| |||| ||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||    
T  20447788 tagagctcaacttttataaataattattgttagattttagtttcttcgttgtcgtttcattaaatataagtaaaaattattgtaaatttattttacttat 20447689  T
Q  428 cgattaagtttaatatat 445  Q
     |||||||||||||||||    
T  20447688 tgattaagtttaatatat 20447671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 198 - 454
Target Start/End: Complemental strand, 47669060 - 47668802
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    ||||||||||||||||||||||  | || || ||||||||||||| || |||||   || || |||| |||| |||||||||||||||| |||||| |||    
T  47669060 ctaccccattaatatattatttgactactccgaacaattttgttggtttaaagatggataatgttaataaaatattgataatctatttaatttagtgtca 47668961  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatata 395  Q
    ||||||||||||||||  |||||||||||  |||||  |||  ||||| ||||||  || ||||  ||||| |||| || |||| |||||| ||||||||    
T  47668960 attatagataaatttgatttcttaaaactttatagagttcaacttttataaataatcatcgttagattttagtttcttcattgtcgtttcattaaatata 47668861  T
Q  396 agtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagtgttca 454  Q
    || || || |||||| ||||||||||  |||| |||||| ||| |||||||||| ||||    
T  47668860 agcaataattattgtaaatttattttcattattgattaaatttcatatattagttttca 47668802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 447
Target Start/End: Original strand, 35466492 - 35466666
Alignment:
Q  273 ataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttca 372  Q
    ||||||||||||||||||| ||||||| | ||||||||| ||| ||  ||||  |||||   ||  |||||  ||||| |||||||   ||||||||||     
T  35466492 ataatctatttagtttagtgtcaattagaaataaatttgacttgttttaactttatagagtacaacttttatgaataattattgttcgattttattttct 35466591  T
Q  373 tcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatatta 447  Q
     |||| |||||||| |||||||||||||||| |||||| |||||||||||| |||  ||||   |||||||||||    
T  35466592 acgttattgtttcattaaatataagtaaaaattattgtaaatttattttacatattaattatacttaatatatta 35466666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 371
Target Start/End: Complemental strand, 29857482 - 29857380
Alignment:
Q  269 attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttatt 368  Q
    ||||||||||||||||||||||| | |||||| |||||| ||| ||||| |||||||  || | ||||  ||||| || |||||||||||| ||||||||    
T  29857482 attgataatctatttagtttagtgttaattatggataaaattgacttctaaaaactctttaaagctcaacttttataagtaactattgttaacttttatt 29857383  T
Q  369 ttc 371  Q
    |||    
T  29857382 ttc 29857380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 442
Target Start/End: Original strand, 46964013 - 46964202
Alignment:
Q  248 agagatattatattaacaaaaat--tgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttaca 345  Q
    |||||||| ||||||| ||||||  ||||||| ||||||||  |||  ||||||| |||||||||| |||||||||||||||| || ||||  ||||| |    
T  46964013 agagatataatattaaaaaaaatattgataatttatttagtagagt--caattatggataaatttgacttcttaaaactccatcgagctcaacttttata 46964110  T
Q  346 aataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaata 442  Q
    || || |||| ||   ||||||||     |||||  ||||| |  |||||||||||||||| || ||||||||||| ||||| ||||| ||||||||    
T  46964111 aaaaattattttttgtttttattt-----gttgtcatttcattttatataagtaaaaaatactgcgaatttattttgcttattgattatgtttaata 46964202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29744193 - 29744274
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtg 101  Q
    ||||||||| ||||| ||||| | |||||||||||| ||||||||||| |||| |||||||   ||||||||||||||||||||    
T  29744193 cattcattatattgatactttaaaaattgacttttgcttcattaaactcatcaattatttc--cttttgtcttcttaacaagtg 29744274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 448
Target Start/End: Original strand, 1838964 - 1839007
Alignment:
Q  405 tattgtgaatttattttacttatcgattaagtttaatatattag 448  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  1838964 tattgtgaatttattttactttttgattaagtttaatatattag 1839007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 34027384 - 34027321
Alignment:
Q  381 gtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatata 444  Q
    |||||| ||||||||||| |||| ||||| ||||| ||||||| |||| |||||||||||||||    
T  34027384 gtttcattaaatataagtgaaaattattgagaattcattttacgtatccattaagtttaatata 34027321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 331
Target Start/End: Original strand, 1838562 - 1838702
Alignment:
Q  193 tacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctatttagtttag 290  Q
    |||| |||| |||||||||||||||||  | || ||||||||||||||||  |||| |||| || ||| || | ||| ||||||||| |||||| ||||     
T  1838562 tacagctactccattaatatattatttgactactccaaacaattttgttggatcaatgagagatgataatacataaatattgataatatatttactttaa 1838661  T
Q  291 tatcaattatagataaatttgtcttcttaaaactccataga 331  Q
    | | || ||| |||||||||  ||||||||| |||||||||    
T  1838662 tgttaactatggataaattttacttcttaaacctccataga 1838702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 34027884 - 34027769
Alignment:
Q  269 attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttatt 368  Q
    ||||||||| | ||||||||||| |||| ||| | |||||||| |||   ||| ||||||| |||||| ||||||||||||||||||  |  ||||||||    
T  34027884 attgataatatgtttagtttagtgtcaactat-gctaaatttgactttgcaaagctccatataactcaaattttacaaataactattaattacttttatt 34027786  T
Q  369 ttcatcgttgttgtttc 385  Q
    ||| | ||||| |||||    
T  34027785 ttctttgttgtcgtttc 34027769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 167 - 448
Target Start/End: Complemental strand, 12834 - 12551
Alignment:
Q  167 cttgaatgattagcataagttttatatacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaaca 265  Q
    ||||||| | |||||||||||| ||||| | ||||||||| |||||||||||| || || |||||||||||||||| ||||||||||||||||||||| |    
T  12834 cttgaataactagcataagtttaatatatagctaccccatgaatatattattttgctactccaaacaattttgttggttcaaagagatattatattaata 12735  T
Q  266 aaaattgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttacctttt 365  Q
    |||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||| |||||    
T  12734 aaaattgatattctatttagtttagtgtcaagtatggataaatttgtcttcttaaaactccatagagctcattttttacaaataactaccgttaactttt 12635  T
Q  366 attttcatcgttgttgtttcactaaatataagtaa-aaaatattgtgaatttattttacttatcgattaagtttaatatattag 448  Q
     ||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12634 cttttcttagttgttgtttcattaaatataagtaaaaaaatattgtgaatttattttacttatcgattaagtttagtatattag 12551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 182 - 454
Target Start/End: Complemental strand, 25247132 - 25246870
Alignment:
Q  182 taagttttatatacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatcta 280  Q
    ||||||||||||| | |||||||||||||||||||||| || || |||||||||||||||| || |||||||||||||||||||||||||||||||| ||    
T  25247132 taagttttatatatagctaccccattaatatattatttggctactccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatata 25247033  T
Q  281 tttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgtt 380  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  || |||| ||||||||||| |||||| |    
T  25247032 tttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagaactcatcttttacaaataa--atagttagcttttattttcttcgttgat 25246935  T
Q  381 gtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagtgttca 454  Q
             ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  25246934 ---------aatataagtaaaaaatattgtcaatttattttacttatcgattatgtttattatataagtgttca 25246870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 198 - 449
Target Start/End: Complemental strand, 29191250 - 29190996
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctatttagtttagtatca 295  Q
    |||| |||||||||||||||||  | || |||||||||||||||| || ||| ||| || |||||  ||||| ||||||| | |||||||||| || |||    
T  29191250 ctactccattaatatattatttgcctactccaaacaattttgttggtttaaaaagagatgatattgcacaaatattgatagtatatttagtttggtgtca 29191151  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgttgtttcactaaatat 394  Q
    ||||| |||||||||   |||||| ||||| ||| | ||||  ||||| || ||||||||||| | ||||||||||| ||||||| | |||| |||||||    
T  29191150 attatggataaatttaagttcttacaactctataaagctcaacttttataactaactattgtttaacttttattttcttcgttgtcggttcattaaatat 29191051  T
Q  395 aagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    ||||||||| |||| | |||||||||||||||| |||||||||||||||||||||    
T  29191050 aagtaaaaattattataaatttattttacttattgattaagtttaatatattagt 29190996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 212 - 444
Target Start/End: Complemental strand, 42664290 - 42664057
Alignment:
Q  212 tattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaattt 310  Q
    |||||||| ||||| |||||||||||||||| || ||| ||   | || |||| ||| | | ||||||||||||||||||| ||||||||| ||||||||    
T  42664290 tattatttggccactccaaacaattttgttggtttaaaaagtggtgattttaaaaaatacttataatctatttagtttagtgtcaattataaataaattt 42664191  T
Q  311 gtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgt 410  Q
    | ||| |||||||| ||||||   ||  ||||| |||||| ||||||||  |||||||||| ||| |||  ||||| | |||||||||||||| ||||||    
T  42664190 gactttttaaaacttcatagagtacaacttttataaataattattgttagattttattttcttcgctgtcatttcatttaatataagtaaaaattattgt 42664091  T
Q  411 gaatttattttacttatcgattaagtttaatata 444  Q
     ||||||||||||||||  |||||||||||||||    
T  42664090 aaatttattttacttattaattaagtttaatata 42664057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 449
Target Start/End: Original strand, 41877423 - 41877677
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    ||||||||||||||||||| || || || |||||||||||||||| || ||| ||| |  || |||| |||| ||| ||||| ||||||||||| | |||    
T  41877423 ctaccccattaatatattacttggctactccaaacaattttgttggttaaaa-agagacgatcttaataaaatattaataatttatttagtttaatgtca 41877521  T
Q  296 attatagata--aatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaata 393  Q
    | |||| |||  |||||| ||||||||||||  ||| ||||||  ||||| |||||| ||||||||  || || |||| ||||||| |||||| ||| ||    
T  41877522 agtatatatataaatttgacttcttaaaacttgataaaactcaacttttataaataattattgttagattatagtttcttcgttgtcgtttcattaatta 41877621  T
Q  394 taagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    |||||||||| |||||| ||||||||||||| || |||||||||||||||||||||    
T  41877622 taagtaaaaattattgtaaatttattttactcattgattaagtttaatatattagt 41877677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 198 - 401
Target Start/End: Original strand, 33828212 - 33828417
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    |||||||||||| ||||| |||  | || |||||||||||||||| || ||| | | || ||||||  |||| ||||||||||||||||||||||| |||    
T  33828212 ctaccccattaagatattttttgactactccaaacaattttgttggttaaaataaagatgatattataaaaatattgataatctatttagtttagtgtca 33828311  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatata 395  Q
    ||||| |||||||||| ||||| |||||||| |||| ||||  ||||| ||||||||||||||| ||||||||||| | ||||  |||||| |||||||     
T  33828312 attatggataaatttgacttctaaaaactccttagagctcaacttttataaataactattgttagcttttattttctttgttgcagtttcattaaatatg 33828411  T
Q  396 agtaaa 401  Q
    ||||||    
T  33828412 agtaaa 33828417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 226 - 370
Target Start/End: Complemental strand, 16366916 - 16366771
Alignment:
Q  226 ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaact 324  Q
    |||||||||||||||| || ||| ||| || ||||||  |||| ||||||||||||||||||||||| | |||||||||||||||||  || | ||||||    
T  16366916 ccaaacaattttgttggttaaaatagagatgatattataaaaatattgataatctatttagtttagtgttaattatagataaatttgaattttaaaaact 16366817  T
Q  325 ccatagaactcatattttacaaataactattgttaccttttatttt 370  Q
     | |||  ||||  ||||| ||||||||||||||| ||||||||||    
T  16366816 tcttagggctcaacttttataaataactattgttatcttttatttt 16366771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 5697417 - 5697319
Alignment:
Q  227 caaacaattttgttgcttcaaagagatattatattaacaaaaat-tgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaact 324  Q
    ||||||||||||||  ||||||||||||| ||||||  |||||| ||||||| |||||| | |||| ||||||||| ||||||||| ||||||| ||||    
T  5697417 caaacaattttgtttattcaaagagatataatattataaaaaatatgataatttatttaatatagtgtcaattataaataaatttgacttcttacaact 5697319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 5676498 - 5676399
Alignment:
Q  226 ccaaacaattttgttgcttcaaagagatattatattaacaaaaat-tgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaact 324  Q
    |||||||||||||||| |||||||| |||| ||||||| |||||| ||||||| |||||| | |||  ||||||||||||||| ||   |||||||||||    
T  5676498 ccaaacaattttgttgattcaaagaaatataatattaaaaaaaatatgataatttatttaatatagagtcaattatagataaacttaagttcttaaaact 5676399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 26534383 - 26534476
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagttta 289  Q
    |||||||||||| ||||||||| | ||| |||||||||||||||| || ||| ||| ||  |||||  |||| |||||||||||||||||||||    
T  26534383 ctaccccattaagatattatttggtcactccaaacaattttgttggttaaaatagagatggtattataaaaatattgataatctatttagttta 26534476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 5730488 - 5730434
Alignment:
Q  391 atataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatatta 447  Q
    ||||||||||||| |||||  ||||||||||  |||| |||||||||||||||||||    
T  5730488 atataagtaaaaattattgcaaatttatttt--ttattgattaagtttaatatatta 5730434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 10207506 - 10207470
Alignment:
Q  465 ttaatatattagttttaaaa-tatattttatttcttc 500  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10207506 ttaatatattagttttaaaaatatattttatttcttc 10207470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 330
Target Start/End: Complemental strand, 10208071 - 10207973
Alignment:
Q  226 ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactc 325  Q
    |||||||||||||||| || ||||||| ||  ||||||  || ||||||||| |||||||||| ||  ||||||||    |||||| ||||||||||||     
T  10208071 ccaaacaattttgttggtttaaagagagatactattaa--aatattgataatttatttagttttgtgccaattata----aatttgacttcttaaaactt 10207978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Original strand, 41877665 - 41877701
Alignment:
Q  465 ttaatatattagtttt-aaaatatattttatttcttc 500  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41877665 ttaatatattagtttttaaaatatattttatttcttc 41877701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 189 - 454
Target Start/End: Original strand, 47235870 - 47236125
Alignment:
Q  189 tatatacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtt 287  Q
    |||||| | |||| ||||||||||||||||| || |  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  47235870 tatatatagctactccattaatatattatttggctattccaaacaattttgttgatttaaagagatattatattaacaaaaattgataatctatttagtt 47235969  T
Q  288 tagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcac 387  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  || |||| ||||||||||| |||||| |           
T  47235970 tagtgtcaattatagataaatttgtcttcttaaaactccatagaactcatcttttacaaataa--atagttagcttttattttcttcgttgat------- 47236060  T
Q  388 taaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagtgttca 454  Q
      |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| | ||||||    
T  47236061 --aatataagtaaaaaatattgtgcatttattttacttatcgattatgtttattatataattgttca 47236125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 449
Target Start/End: Original strand, 6036750 - 6037018
Alignment:
Q  184 agttttatatacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctat 281  Q
    ||||||||||  | ||||||||||||  |||||||  || || |||||||||||||||| ||||||| || || |||||| ||||| ||| | ||| |||    
T  6036750 agttttatatgtagctaccccattaaattattattcggctactccaaacaattttgttggttcaaagggagatgatattacacaaatattaaaaatatat 6036849  T
Q  282 ttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgtt 380  Q
      | |||| |  ||||||| |||||||||  ||||||||||||| |||||  |||  ||||| ||||||||| | || | ||||||||||| ||||||      
T  6036850 caaatttaatgacaattatggataaattttacttcttaaaactcaatagagttcaacttttataaataactactatttagcttttattttcttcgttgcc 6036949  T
Q  381 gtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
     ||||| ||||||||| | | || |||| |||||||||||||  ||| ||| |||||||||||||||||    
T  6036950 atttcattaaatataaattataattattctgaatttattttatatattgatgaagtttaatatattagt 6037018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 437
Target Start/End: Complemental strand, 28086225 - 28086136
Alignment:
Q  349 aactattgtt-accttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtt 437  Q
    |||||||||| | ||||||||||| ||| || ||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  28086225 aactattgtttaacttttattttcttcgatgctgtttcattaaatataagaaaaaattattgtaaatttattttacttatcgattaagtt 28086136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 198 - 370
Target Start/End: Original strand, 19910105 - 19910276
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    |||||||||||| ||||||||| || || |||||||||||||||| || ||| ||| || ||||||  |||| ||||||||||||||| ||||||| |      
T  19910105 ctaccccattaaaatattatttggctactccaaacaattttgttggttaaaacagagatgatattataaaaatattgataatctattttgtttagtgt-- 19910202  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttatttt 370  Q
     |||| |||||||||| ||||| ||||| || |||| | ||  ||||| ||||||||||||||| | ||||||||    
T  19910203 -ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgtttatttt 19910276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 38074251 - 38074333
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagt 100  Q
    |||||||||||||| |||||| | ||||||||||   ||||||||| | |||| |||||||  |||||||| |||||||||||    
T  38074251 cattcattacattgcaactttaaaaattgactttgacttcattaaattcatcaattatttctatttttgtcatcttaacaagt 38074333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 27705468 - 27705385
Alignment:
Q  227 caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaattt 310  Q
    ||||||||||||||| || ||| | | || ||||||| |||| ||||||||||||||||| || ||||||||||| |||||||||    
T  27705468 caaacaattttgttggtttaaaaaaa-ataatattaaaaaaatattgataatctatttagcttggtatcaattatggataaattt 27705385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 425
Target Start/End: Complemental strand, 34821119 - 34821033
Alignment:
Q  339 ttttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttactt 425  Q
    ||||| |||||| ||| ||||  ||||| |||| || ||||  |||||| ||||||||||||||| |||| | ||||||||||||||    
T  34821119 ttttataaataattatagttagattttagtttcttcattgtcatttcacaaaatataagtaaaaattattataaatttattttactt 34821033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 27704825 - 27704784
Alignment:
Q  405 tattgtgaatttattttacttatcgattaagtttaatatatt 446  Q
    |||||| ||||||||||||||||  |||||||||||||||||    
T  27704825 tattgtaaatttattttacttattcattaagtttaatatatt 27704784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 199 - 449
Target Start/End: Original strand, 7093531 - 7093783
Alignment:
Q  199 taccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaat 297  Q
    |||||||||||||||||||| | | || |||||||||||||||| |||||| ||| || |||| || ||| | ||||||||||||||||||||| |||||    
T  7093531 taccccattaatatattattgaactactccaaacaattttgttggttcaaacagagatgatatcaagaaataatgataatctatttagtttagtgtcaat 7093630  T
Q  298 tatagataaatttgtcttcttaaaactccatagaactcat-attttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataa 396  Q
    ||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||||||  ||||||||||| ||||||| |||||| |||||||||    
T  7093631 tattgataaatttgtcttcttaaaactccaaagaacttatcattttacaaataactattgtttgcttttattttcttcgttgtcgtttcattaaatataa 7093730  T
Q  397 gtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    ||||||| ||||||||||||| ||||||||| ||  |||||||||||||||||    
T  7093731 gtaaaaattattgtgaatttactttacttattgaccaagtttaatatattagt 7093783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 198 - 449
Target Start/End: Original strand, 15962308 - 15962562
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctatttagtttagtatca 295  Q
    ||||| |||||||||||||||| |  || |||| ||||||||||| || |||| || |  |||||  ||||| ||| ||||| ||||||||||||| |||    
T  15962308 ctacctcattaatatattatttggttactccaatcaattttgttggtttaaagggagaagatattgcacaaatattcataatatatttagtttagtgtca 15962407  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgttgtttcactaaatat 394  Q
    ||||| |||| ||||   |||||| ||||||||| | ||||   |||| |||||||||| ||| | ||||||||||| ||||||| |||||| |||||||    
T  15962408 attatggatacatttaagttcttacaactccataaagctcaacatttataaataactatggtttaacttttattttcttcgttgtcgtttcattaaatat 15962507  T
Q  395 aagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||    
T  15962508 aagtaaaaattattgtaaatttattttacttattgattaagtttaatgtattagt 15962562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 202 - 434
Target Start/End: Complemental strand, 44508369 - 44508135
Alignment:
Q  202 cccattaatatattatttagccacc-caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaatta 299  Q
    ||||||||| ||||||| ||| ||  ||||||||||| ||| || ||||||  || || |||| |||| |||||||||||||||| |||||| |||||||    
T  44508369 cccattaatgtattattcagctacttcaaacaattttattggtttaaagagggatgatgttaataaaatattgataatctatttaatttagtgtcaatta 44508270  T
Q  300 tagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagta 399  Q
    |||||||||||| ||||||||||||  ||||| ||||  ||||| |||||| |||| | |  ||||| |||| ||||||| |||||| ||||||||||||    
T  44508269 tagataaatttgacttcttaaaactttatagagctcaacttttataaataattattttcagattttagtttcttcgttgtcgtttcattaaatataagta 44508170  T
Q  400 aaaaatattgtgaatttattttacttatcgattaa 434  Q
    |||  |||||| |||||||||||||| ||||||||    
T  44508169 aaatttattgtaaatttattttacttgtcgattaa 44508135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 280 - 447
Target Start/End: Original strand, 41335963 - 41336130
Alignment:
Q  280 atttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgt 379  Q
    |||||||||||| ||||||||| |||||||||  || |||||| | ||||||  |||  ||||| | |||| ||||||||  |||||||||| |||||||    
T  41335963 atttagtttagtgtcaattataaataaatttgatttgttaaaagttcatagagttcaacttttatacataattattgttagattttattttcttcgttgt 41336062  T
Q  380 tgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatatta 447  Q
     |||||| ||||||||| |||||| || ||| ||||||||||||||||  |||| |||||||||||||    
T  41336063 agtttcattaaatataactaaaaattaatgtaaatttattttacttattaattaggtttaatatatta 41336130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 8818272 - 8818205
Alignment:
Q  37 ttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtgcct 104  Q
    |||| |||||||||||| |||||||||||  ||| ||||||| |||||||||||||||||||||||||    
T  8818272 ttgaaaattgacttttgtttcattaaactcgtcaattatttccttttttgtcttcttaacaagtgcct 8818205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 13645906 - 13645829
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaa 95  Q
    ||||||||||||||||||||| | ||||||||||   ||||||||||| |||| |||||||  ||||| |||||||||    
T  13645906 cattcattacattgaaactttaaaaattgactttgacttcattaaactcatcaattatttctatttttatcttcttaa 13645829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 42791009 - 42790937
Alignment:
Q  28 attgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagt 100  Q
    |||||||| || | |||||||||||| ||||| ||| | |||| ||||||| ||| |||||||||||||||||    
T  42791009 attgaaacatttaaaattgacttttgtttcatcaaattcatcaattatttcttttcttgtcttcttaacaagt 42790937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 3840316 - 3840240
Alignment:
Q  20 ttcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaa 98  Q
    ||||||||||| ||||||| |  ||||| ||||| ||||||||||| |||| ||||||   ||||||||||||||||||    
T  3840316 ttcattacattaaaactttaa--attgatttttgcttcattaaacttatcaattatttttatttttgtcttcttaacaa 3840240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 15348447 - 15348519
Alignment:
Q  28 attgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagt 100  Q
    ||||||||||  | |||||| |||||||| |||||||| |||| |||||||   |||| ||||||||||||||    
T  15348447 attgaaacttaaaaaattgatttttgatttattaaactcatcaattatttccacttttatcttcttaacaagt 15348519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 17120204 - 17120264
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttc 78  Q
    |||| ||||||||||||| || | |||||||||||| ||||| ||||| |||| |||||||    
T  17120204 cattgattacattgaaaccttaaaaattgacttttgcttcatgaaactcatcaattatttc 17120264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 187 - 449
Target Start/End: Complemental strand, 35952092 - 35951827
Alignment:
Q  187 tttatatacaactaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatt-aacaaaaattgataatctattta 284  Q
    |||||||  |||||| ||||| ||||||||||| || || |||||||||||||||| || ||| ||| || ||||| |||||| ||||||||| ||||||    
T  35952092 tttatatgtaactactccattgatatattatttggctactccaaacaattttgttggtttaaaaagagatgatattgaacaaatattgataatatattta 35951993  T
Q  285 gtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgttgtt 383  Q
    ||||||| |||||||| |||||||||   |||||| ||||| ||| | ||||  ||||| |||||||||||||| | ||||||||||| |||||||  ||    
T  35951992 gtttagtgtcaattatggataaattttagttcttacaactctataaagctcaacttttataaataactattgtttaacttttattttcttcgttgtcatt 35951893  T
Q  384 tcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    ||| |||||||||||||||| |||||| ||||||||||| |||| |||||| ||||||||| ||||    
T  35951892 tcattaaatataagtaaaaattattgtaaatttattttatttattgattaactttaatatactagt 35951827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 202 - 449
Target Start/End: Complemental strand, 33140454 - 33140206
Alignment:
Q  202 cccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctatttagtttagtatcaatta 299  Q
    |||||||||||||||||| || || |||||||||||| ||| || ||||||| || |||||  ||||  || |||||| ||||||||  ||| |||||||    
T  33140454 cccattaatatattatttggctactccaaacaattttattggtttaaagagagatgatattgcacaagtatcgataatatatttagt--agtgtcaatta 33140357  T
Q  300 tagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgttgtttcactaaatataagt 398  Q
    | |||||||||   |||||| ||||||||| | |||| |||||| |||||||||||||| | ||||||||||| ||||||| |||||| |||||||||||    
T  33140356 tggataaatttaagttcttacaactccataaagctcaaattttataaataactattgtttaacttttattttcttcgttgtcgtttcattaaatataagt 33140257  T
Q  399 aaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    ||||| || ||| || |||||||| |||| |||||||||||||||||||||    
T  33140256 aaaaattaatgtaaaattattttatttattgattaagtttaatatattagt 33140206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 198 - 444
Target Start/End: Original strand, 29790575 - 29790821
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaa 296  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||| || ||| ||| || || |||| || | || |||||||||||||| |||| ||||    
T  29790575 ctaccacattaatatattatttggccactccaaacaattttgttggtttaaaaagagatgattttaaaaatactt-ataatctatttagtctagtgtcaa 29790673  T
Q  297 ttatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataa 396  Q
    |||||  |||||||| ||| |||||||| |||| |   ||  ||||| |||||| ||||||||  |||||||||| ||| |||  ||||| || ||||||    
T  29790674 ttataagtaaatttgacttgttaaaacttcataaagtacaacttttataaataattattgttagattttattttcttcgctgtcatttcattacatataa 29790773  T
Q  397 gtaaaaaatattgtgaatttattttacttatcgattaagtttaatata 444  Q
    ||||||| |||||| ||||||||||||||||  |||||||||||||||    
T  29790774 gtaaaaattattgtaaatttattttacttattaattaagtttaatata 29790821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 244 - 447
Target Start/End: Original strand, 3707301 - 3707506
Alignment:
Q  244 tcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattataga-taaatttgtcttcttaaaactccatagaactcatattt 341  Q
    ||||||||  || ||||||| |||| ||||||||| || ||||| | || ||||||| | | |||||||| |||| ||||||||| |||| ||||   |     
T  3707301 tcaaagagtgataatattaaaaaaatattgataatataattagtatggtgtcaattaaatactaaatttgacttcataaaactccttagagctcaacatc 3707400  T
Q  342 tacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaat 441  Q
    || ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||| | |||||  |||||||||||||||| |||||||||| ||    
T  3707401 tataaataactattcttaacttttattttcttcgttgttgtttcattaaatataagtaaacattattgcaaatttattttacttattgattaagttttat 3707500  T
Q  442 atatta 447  Q
     |||||    
T  3707501 ttatta 3707506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 402
Target Start/End: Complemental strand, 15471201 - 15471024
Alignment:
Q  226 ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaact 324  Q
    |||||||||||||||| || ||| ||| || ||| ||  |||| ||||||||||||||||||||||| |||||||| ||||||||||  |||| ||||||    
T  15471201 ccaaacaattttgttggttaaaacagagatgataatacaaaaatattgataatctatttagtttagtgtcaattatggataaatttgaattctaaaaact 15471102  T
Q  325 ccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaa 402  Q
    |  |||| ||||  ||||| ||||||||| ||||| ||||| ||||| | ||||| |||||| ||||||| |||||||    
T  15471101 cattagagctcaacttttataaataactaatgttaacttttcttttctttgttgtagtttcattaaatatgagtaaaa 15471024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 402
Target Start/End: Complemental strand, 14145042 - 14144833
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    ||||| |||||| |||||||||  |||| ||||| |||||||||| || ||| | | || ||||||  |||| ||||||||||||||||||||||| |||    
T  14145042 ctacctcattaagatattatttgaccactccaaataattttgttggttaaaacatagatgatattataaaaatattgataatctatttagtttagtgtca 14144943  T
Q  296 at---tatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaat 392  Q
    ||   ||| |||||||||| | ||| |||||||| |||| || |  ||||| |||||| |||||||| ||||||||||| | ||||  |||||| |||||    
T  14144942 ataattatggataaatttgacctctaaaaactccttagagcttaacttttataaataagtattgttagcttttattttctttgttgcagtttcattaaat 14144843  T
Q  393 ataagtaaaa 402  Q
    || |||||||    
T  14144842 atgagtaaaa 14144833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 449
Target Start/End: Complemental strand, 10262830 - 10262759
Alignment:
Q  378 gttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    ||||||| | |||||||| ||||||| || ||| || ||||||||||||| |||||||||||||||||||||    
T  10262830 gttgttttattaaatatatgtaaaaattactgtaaaattattttacttattgattaagtttaatatattagt 10262759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 38139706 - 38139765
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttattt 77  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||| | |||| ||||||    
T  38139706 catttattacattgaaactttgaaaattgacttttgtttcattaaattcatcaattattt 38139765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 198 - 447
Target Start/End: Original strand, 26445924 - 26446175
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctatttagtttagtatca 295  Q
    ||||| |||||||||||||| | || || |||||||||||||||| || ||| ||| || |||||  ||||| ||||||||| |||||||||| || |||    
T  26445924 ctacctcattaatatattatctggctactccaaacaattttgttggtttaaaaagagat-atattgcacaaatattgataatatatttagtttggtgtca 26446022  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgttgtttcactaaatat 394  Q
    ||||| |||||||||   |||||| ||||| ||| | ||||  ||||| |||||| ||||||| | ||||||||||| ||||||||| |||| |||||||    
T  26446023 attatggataaatttaagttcttacaactctataaagctcaacttttataaataattattgtttaacttttattttcttcgttgttgattcattaaatat 26446122  T
Q  395 aagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatatta 447  Q
     |||||||| |||||| ||||||||||| |||| |||||||||||||||||||    
T  26446123 gagtaaaaactattgtaaatttattttatttattgattaagtttaatatatta 26446175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 202 - 454
Target Start/End: Original strand, 570950 - 571207
Alignment:
Q  202 cccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa---attgataatctatttagtttagtatcaat 297  Q
    |||||||||||||||||| || || ||||| |||||||||| || ||||||| || |||||    |||   ||||||||| |||||||| |||| |||||    
T  570950 cccattaatatattatttggctactccaaataattttgttggtttaaagagagatgatattgcataaatatattgataatatatttagtctagtgtcaat 571049  T
Q  298 tatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttcatcgttgttgtttcactaaatataa 396  Q
    ||| |||||||||   || ||| ||||| ||| | ||||  | ||| ||||||| |||||| | ||||||||||  |||||||  ||||| || ||||||    
T  571050 tatggataaatttaagttattacaactctataaagctcaactattataaataacaattgtttaacttttattttattcgttgtcatttcattatatataa 571149  T
Q  397 gtaaaaaatattgtgaatttattttacttatcgattaagtttaatatattagtgttca 454  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  571150 gtaaaaaatattgtaaatttattttacttattgattaagtttaatatattagttttca 571207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 202 - 449
Target Start/End: Original strand, 39650417 - 39650666
Alignment:
Q  202 cccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaatta 299  Q
    ||||||||||||||| || || || |||||||||||||||| || ||||||  || ||||||| |||| |||||||||||||||| |||||  |||||||    
T  39650417 cccattaatatattacttggctactccaaacaattttgttggtttaaagagggataatattaataaaatattgataatctatttaatttagcgtcaatta 39650516  T
Q  300 tagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagta 399  Q
    ||||| |||||| ||||||||||||  | |||  |||  ||||| ||| ||   ||||||  ||||| |||| |||||| ||||||| |||||||||| |    
T  39650517 tagatgaatttgacttcttaaaactttacagagttcaacttttataaacaatctttgttagattttagtttcttcgttgctgtttcattaaatataagca 39650616  T
Q  400 aaaaatattgtgaatttattttacttatcgattaagtttaatatattagt 449  Q
    |||| |||||| ||||||||||  |||| |||||| ||| ||||||||||    
T  39650617 aaaattattgtaaatttattttcattattgattaaatttcatatattagt 39650666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 403
Target Start/End: Complemental strand, 45483918 - 45483714
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaatttt-gttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatc 294  Q
    |||||||||| ||||||||||| || || |||||||||||| |||| || ||||||  || |||| || |||| || |||||||||||||||||||||||    
T  45483918 ctaccccattgatatattatttggctactccaaacaatttttgttggtttaaagagggatgatatcaataaaatatagataatctatttagtttagtatc 45483819  T
Q  295 aattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatat 394  Q
    |||||||||||||||      ||||||||| |||||| | ||  ||||| |||||| ||||||||  |||||||||| | | ||| |||||| |||||||    
T  45483818 aattatagataaatt----gacttaaaacttcatagagcacaacttttataaataattattgttagattttattttctttgctgtcgtttcattaaatat 45483723  T
Q  395 aagtaaaaa 403  Q
    |||||||||    
T  45483722 aagtaaaaa 45483714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 371
Target Start/End: Original strand, 28521495 - 28521638
Alignment:
Q  229 aacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactcca 327  Q
    ||||||||||||| || ||||||| || ||||||  | || ||||||||||||||||||||||||||||||||  ||||||||| |||||||||| | ||    
T  28521495 aacaattttgttggtttaaagagagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaatttca 28521594  T
Q  328 tagaactcatattttacaaataactattgttaccttttattttc 371  Q
    |||| ||||  ||||  | |||||||||||||  ||||||||||    
T  28521595 tagagctcaatttttgtagataactattgttagtttttattttc 28521638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 447
Target Start/End: Complemental strand, 33087834 - 33087739
Alignment:
Q  352 tattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatatta 447  Q
    ||||||||  |||||||||| | ||||| |||| | |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  33087834 tattgttagattttattttctttgttgtcgttttattaaatataagtaaaagttattgtgaatttattttacttattgattaagtttaatatatta 33087739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 392
Target Start/End: Complemental strand, 28146915 - 28146745
Alignment:
Q  226 ccaaacaattttgtt-gcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaac 323  Q
    ||||||||||||||| | |||||||||| ||  | |||| |||| ||||||| |||| |||||||||| |||||||| ||||| |||| ||||| |||||    
T  28146915 ccaaacaattttgtttggttcaaagagagatgctcttaaaaaaatattgatattctaattagtttagtgtcaattatggataactttgacttctgaaaac 28146816  T
Q  324 tccata--gaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaat 392  Q
    | ||||  ||||||| |||||| | ||||||||||||| ||||||||||| || ||||  ||||| |||||    
T  28146815 ttcatatagaactcaaattttatagataactattgttagcttttattttcttccttgtcatttcattaaat 28146745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 415
Target Start/End: Complemental strand, 29952935 - 29952792
Alignment:
Q  273 ataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttc 371  Q
    ||||| |||||||||||||  ||||||| |||||||||   ||| || ||||||||| | |||| |||||| |||||| ||||||| | |||||||||||    
T  29952935 ataatatatttagtttagtgacaattatggataaatttaagttcatacaactccataaagctcaaattttataaataattattgtttaacttttattttc 29952836  T
Q  372 atcgttgttgtttcactaaatataagtaaaaaatattgtgaatt 415  Q
     ||||||| |||||  |||||||||||||||| |||||| ||||    
T  29952835 ttcgttgtcgtttcgttaaatataagtaaaaattattgttaatt 29952792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 415
Target Start/End: Complemental strand, 30002089 - 30001946
Alignment:
Q  273 ataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgtt-accttttattttc 371  Q
    ||||| |||||||||||||  ||||||| |||||||||   ||| || ||||||||| | |||| |||||| |||||| ||||||| | |||||||||||    
T  30002089 ataatatatttagtttagtgacaattatggataaatttaagttcatacaactccataaagctcaaattttataaataattattgtttaacttttattttc 30001990  T
Q  372 atcgttgttgtttcactaaatataagtaaaaaatattgtgaatt 415  Q
     ||||||| |||||  |||||||||||||||| |||||| ||||    
T  30001989 ttcgttgtcgtttcgttaaatataagtaaaaattattgttaatt 30001946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 37228349 - 37228430
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaag 99  Q
    |||| |||||||||||||||| | |||||||||||| ||||||||||| |||| |||||||  |||||||||||||||||||    
T  37228349 catttattacattgaaactttaaaaattgacttttgcttcattaaactcatcaattatttctatttttgtcttcttaacaag 37228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 358
Target Start/End: Complemental strand, 33087989 - 33087858
Alignment:
Q  227 caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactc 325  Q
    ||||||||||||||  ||||||||    | ||||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||     
T  33087989 caaacaattttgttagttcaaagaagggtgatattaataaaatattgataatctatttagtttagtgtcaattatagataaa-ttgacttcttaaaactt 33087891  T
Q  326 catagaactcatattttacaaataactattgtt 358  Q
    |||| | ||||  ||||| |||||| |||||||    
T  33087890 cataaagctcaacttttataaataattattgtt 33087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 371
Target Start/End: Complemental strand, 28050856 - 28050709
Alignment:
Q  226 ccaaacaattttgtt-gcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaac 323  Q
    |||||||| |||||| | |||||||||| || ||| ||| |||| || |||||||||||||||||| | || |||||||||||||||   |||||||| |    
T  28050856 ccaaacaaatttgtttggttcaaagagagatgataataaaaaaatatggataatctatttagtttaatgtctattatagataaatttaatttcttaaatc 28050757  T
Q  324 tccatagaactcatattttacaaataactattgttaccttttattttc 371  Q
    | |||||||||||  ||||| | |||||||||| || |||||||||||    
T  28050756 ttcatagaactcaacttttatagataactattggtagcttttattttc 28050709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 449
Target Start/End: Original strand, 49754285 - 49754395
Alignment:
Q  339 ttttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttatcgattaagttt 438  Q
    ||||| |||||| |||| |||  |||||||||| |||||    ||||| | |||||||||||||| || | |||||||||||||||||| ||||||||||    
T  49754285 ttttataaataattattcttagattttattttcttcgttaacatttcattcaatataagtaaaaattactatgaatttattttacttattgattaagttt 49754384  T
Q  439 aatatattagt 449  Q
    |||||||||||    
T  49754385 aatatattagt 49754395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 365
Target Start/End: Complemental strand, 46091958 - 46091793
Alignment:
Q  202 cccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaatta 299  Q
    |||||||| ||||||||| || || |||||||||||| ||| || ||| | | || ||||||  |||| |||||||||| |||||||||||| | |||||    
T  46091958 cccattaagatattatttggctactccaaacaattttattggttaaaacatagataatattataaaaatattgataatccatttagtttagtgttaatta 46091859  T
Q  300 tagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttacctttt 365  Q
    | |||||||||| ||||| || ||||| |||| ||||   |||| ||||||||||||||| |||||    
T  46091858 tggataaatttgacttctaaatactccttagagctcaacatttataaataactattgttagctttt 46091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 28476669 - 28476747
Alignment:
Q  23 attacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtg 101  Q
    |||||||||||||||| | | ||||| |||| ||||||||||| |||| |||||||   ||||||||||||||||||||    
T  28476669 attacattgaaactttaaaagttgacgtttgcttcattaaactcatcaattatttctacttttgtcttcttaacaagtg 28476747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 29952780 - 29952744
Alignment:
Q  465 ttaatatattagtttt-aaaatatattttatttcttc 500  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29952780 ttaatatattagtttttaaaatatattttatttcttc 29952744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 30001934 - 30001898
Alignment:
Q  465 ttaatatattagtttt-aaaatatattttatttcttc 500  Q
    |||||||||||||||| ||||||||||||||||||||    
T  30001934 ttaatatattagtttttaaaatatattttatttcttc 30001898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Original strand, 49754383 - 49754419
Alignment:
Q  465 ttaatatattagtttt-aaaatatattttatttcttc 500  Q
    |||||||||||||||| ||||||||||||||||||||    
T  49754383 ttaatatattagtttttaaaatatattttatttcttc 49754419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 392
Target Start/End: Original strand, 270242 - 270439
Alignment:
Q  196 aactaccccattaatatattatttagccacc-caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtat 293  Q
    |||||||||||||| ||||||||| || ||  ||||||||||  ||| || ||| ||| || ||||||  |||| |||||||||||| |||||||||| |    
T  270242 aactaccccattaagatattatttggctacttcaaacaattta-ttggttaaaacagagatgatattataaaaatattgataatctacttagtttagtgt 270340  T
Q  294 caattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaat 392  Q
    |||||||| ||||||||| ||| | |||||||| |||| ||||  ||||| ||||||||||| ||| ||||||||||| | ||||  |||||| |||||    
T  270341 caattataaataaatttgacttttaaaaactccttagagctcaacttttataaataactatttttagcttttattttctttgttgcagtttcattaaat 270439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 447
Target Start/End: Original strand, 20902845 - 20902975
Alignment:
Q  317 ttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatataagtaaaaaatattgtgaattt 416  Q
    |||||||| ||||||  |||  ||||| | |||| ||||||||  |||||||||| |||| || |||||| ||||||||| |||||| || ||| |||||    
T  20902845 ttaaaacttcatagagttcaacttttatacataattattgttagattttattttcttcgtggtagtttcattaaatataactaaaaattaatgtcaattt 20902944  T
Q  417 attttacttatcgattaagtttaatatatta 447  Q
    |||||||||||  ||||||||||||||||||    
T  20902945 attttacttattaattaagtttaatatatta 20902975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 427
Target Start/End: Original strand, 20921404 - 20921555
Alignment:
Q  275 aatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatc 374  Q
    ||||||||||||||||| ||||||||| |||||||||  || |||||| | ||||||  |||  || || | ||||   ||||||  |||||||||| ||    
T  20921404 aatctatttagtttagtgtcaattataaataaatttgattt-ttaaaaattcatagagttcaacttctatacataatatttgttagattttattttcttc 20921502  T
Q  375 gttgttgtttcactaaatataagtaaaaaatattgtgaatttattttacttat 427  Q
    ||||| |||||| ||||||||| |||||| || ||| ||||||||||||||||    
T  20921503 gttgtagtttcattaaatataactaaaaattaatgtaaatttattttacttat 20921555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 198 - 403
Target Start/End: Original strand, 4017051 - 4017257
Alignment:
Q  198 ctaccccattaatatattatttagccacc-caaacaattttgttgcttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatca 295  Q
    |||||||||| | |||||||||| | ||  ||||||||||||||  ||||| |||| || ||||||| || | |||  |||||||||||||||||| | |    
T  4017051 ctaccccattcaaatattatttaacaacttcaaacaattttgttagttcaaggagagatgatattaaaaatacatttgtaatctatttagtttagtgtta 4017150  T
Q  296 attatagataaatttgtcttcttaaaactccatagaactcatattttacaaataactattgttaccttttattttcatcgttgttgtttcactaaatata 395  Q
    |||||  ||||||||| ||||| ||||||| ||||||||||  ||||| |||||| | || |||  |||| ||||  | ||||  |||||| ||||||||    
T  4017151 attatgaataaatttgacttctgaaaactcgatagaactcaacttttataaataattttttttagatttt-ttttttttgttgcagtttcattaaatata 4017249  T
Q  396 agtaaaaa 403  Q
    ||||||||    
T  4017250 agtaaaaa 4017257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 386
Target Start/End: Complemental strand, 13325635 - 13325477
Alignment:
Q  229 aacaattttgttgcttcaaagagatattatattaacaaaaattgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccat 328  Q
    |||||||||| || || ||||||| || ||||  ||||| | | ||||| ||||||||||||| | ||||||||||||||||   |||||| ||||||||    
T  13325635 aacaattttgatggtttaaagagagatgatatgcacaaataataataatatatttagtttagtgtaaattatagataaatttaagttcttataactccat 13325536  T
Q  329 agaactcatattttacaaataactatt-gttaccttttattttcatcgttgttgtttca 386  Q
    | |  | |  ||||| |||||||||||  ||| ||||||||||| ||||| | ||||||    
T  13325535 aaagttaaatttttataaataactattatttaacttttattttcttcgttatcgtttca 13325477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 22295285 - 22295362
Alignment:
Q  18 cattcattacattgaaactttgagaattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaa 95  Q
    ||||||||||||||||||||| | ||||||||||   |||||||||||| ||| || ||||  ||||| |||||||||    
T  22295285 cattcattacattgaaactttaaaaattgactttgacttcattaaactattcaattctttctatttttatcttcttaa 22295362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 371
Target Start/End: Complemental strand, 16582 - 16436
Alignment:
Q  226 ccaaacaattttgttgcttcaaagagatattatattaacaaaaat--tgataatctatttagtttagtatcaattatagataaatttgtcttcttaaaac 323  Q
    |||||||||||||||| || ||||||  || ||||||| ||||||  ||||||| |||||||||||||||||||| | ||||||| || ||||||||||     
T  16582 ccaaacaattttgttggtttaaagagggatgatattaaaaaaaatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaaa- 16484  T
Q  324 tccatagaactcatattttacaaataactattgttaccttttattttc 371  Q
    | |||| | ||||  ||||| | ||||||||| ||| |||||||||||    
T  16483 ttcatacatctcaacttttatagataactattattagcttttattttc 16436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 18234 - 18108
Alignment:
Q  198 ctaccccattaatatattatttagccac-ccaaacaattttgttgcttcaaagagatattatatta-acaaaaattgataatctatttagtttagtatca 295  Q
    ||||| ||||||||||||||||  | || ||||| |||||||||| || ||||  | || |||||| ||||| ||| ||||| ||||||||||| | |||    
T  18234 ctacctcattaatatattatttgtctactccaaataattttgttggtttaaaggaagatgatattacacaaatattaataatatatttagtttattgtca 18135  T
Q  296 attatagataaatttgtcttcttaaaa 322  Q
    ||||||||| |||||  ||||||||||    
T  18134 attatagatgaattttacttcttaaaa 18108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 18013 - 17957
Alignment:
Q  391 atataagtaaaaaatattgtgaatttattttacttatcgattaagtttaatatatta 447  Q
    ||||||||| ||| |||||| ||||||||||  |||| |||||||||||||||||||    
T  18013 atataagtacaaattattgtaaatttattttctttattgattaagtttaatatatta 17957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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