View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_high_11 (Length: 333)
Name: NF11878_high_11
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 4058563 - 4058245
Alignment:
| Q |
15 |
aagaacacttaatcatgtgcccaagctaaatgtaaaatataaaacttatagttcagttgtataatttaaagttgcagaaccacaccaaagtacatcccaa |
114 |
Q |
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| T |
4058563 |
aagaacacttaatcatgtgcccaagctaaatgtaaaatataaaacctatagttcagttgtataatttaaagttgcagaaccacaccaaagtacatcccaa |
4058464 |
T |
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| Q |
115 |
aacatgattaggtaagcgcacacatgattttctttggaaattgagttgagcaaattcannnnnnnatatatgtcttccgttaaattcgtgttaatgcttt |
214 |
Q |
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| T |
4058463 |
aacatgattaggtaagcgcacacatgattttctttggaaattgagttgagcaaattcatttttttatatatgtcttccgttaaattcgtgttaatgcttt |
4058364 |
T |
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| Q |
215 |
ggataatgcaagtttaccacattagaaatatcaatagataccttcttaatcattaatccaaggattagtgttaaaaaagtagtctaaaagtgatcatgaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4058363 |
ggataatgcaagtttaccacattagaaatatcaatagataccttcttaatcattaatccaaggattagtgttaaaaaagtagtctaaaagtgatcatgaa |
4058264 |
T |
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| Q |
315 |
ccgaaagaaaaactatatt |
333 |
Q |
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||||||||||||||||||| |
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| T |
4058263 |
ccgaaagaaaaactatatt |
4058245 |
T |
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