View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_high_13 (Length: 318)
Name: NF11878_high_13
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 35999388 - 35999695
Alignment:
| Q |
11 |
cagagaccagagcaagtcgtggccagaataccattctcgcattatggtcttgttcaattgaatggaaggtaaaaccaatggtttatcaatggtcaagcac |
110 |
Q |
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| T |
35999388 |
cagagaccagagcaagtcgtggccagaataccattctcgcattatggtcttgttcaattgaatggaaggtaaaaccaatggtttatcaatggtcaagcac |
35999487 |
T |
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| Q |
111 |
aaatcaagtctgagatacatacacattaattatgctaattcacaaaacttgtataataagattaattaattacttgcttctgaagtctaaagtataaaca |
210 |
Q |
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| T |
35999488 |
aaatcaagtctgagatacatacacattaattatgctaattcacaaaacttgtacaataagattagttaattacttgcttctgaagtctgaagtataaaca |
35999587 |
T |
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| Q |
211 |
tttgcctcctgaaatttgtttagatcctttgcattactattatgtccttccattatgcagcccctcacactttaatgggtaaaaaatcaataagaataaa |
310 |
Q |
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| T |
35999588 |
tttgcctcctgaaatttgtttagatcctttgcattactattatgtccttccattatgcagcccctcacactttaaagggtaaaaaatagagaagaataaa |
35999687 |
T |
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| Q |
311 |
aattttct |
318 |
Q |
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| T |
35999688 |
acttttct |
35999695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 35994616 - 35994785
Alignment:
| Q |
13 |
gagaccagagcaagtcgtggccagaataccattctcgcattatggtcttgttcaattgaatggaaggtaaaaccaatggtttatcaatggtcaagcacaa |
112 |
Q |
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| T |
35994616 |
gagaccagagcaagtagtggccagaataccatccatgcattatgctcttgttcaattaaatggcagggcaaaacaatggtttatcaatggtcaagcacaa |
35994715 |
T |
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| Q |
113 |
atcaagtctgagatacatacacattaattatgctaattcacaaaacttgtataataagattaattaatta |
182 |
Q |
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| T |
35994716 |
atgaaatctgagatacatacacagcatgcatgctaattcaccaaacttgtacattaagattaattaatta |
35994785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 35994932 - 35995028
Alignment:
| Q |
222 |
aaatttgtttagatcctttgcattactattatgtccttccattatgcagcccctcacactttaatgggtaaaaaatcaataagaataaaaattttct |
318 |
Q |
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| T |
35994932 |
aaatttgcttagatcctttgcattactattgtgtcgttcctttatgcagcccctcacactttaaagggtcaaaaatagagaagaataaaacttttct |
35995028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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