View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11878_high_14 (Length: 296)

Name: NF11878_high_14
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11878_high_14
NF11878_high_14
[»] chr1 (8 HSPs)
chr1 (8-285)||(17700332-17700609)
chr1 (8-285)||(17663370-17663647)
chr1 (55-280)||(21899130-21899355)
chr1 (193-256)||(38227135-38227198)
chr1 (20-60)||(21899653-21899693)
chr1 (97-143)||(22663781-22663827)
chr1 (9-87)||(22666782-22666860)
chr1 (193-269)||(38227194-38227270)
[»] chr4 (3 HSPs)
chr4 (97-285)||(51220005-51220189)
chr4 (193-280)||(35250154-35250241)
chr4 (193-280)||(51220797-51220884)
[»] chr7 (2 HSPs)
chr7 (200-285)||(440899-440984)
chr7 (61-143)||(441038-441120)
[»] chr8 (3 HSPs)
chr8 (63-127)||(44989244-44989308)
chr8 (79-169)||(44989794-44989884)
chr8 (9-54)||(44989154-44989199)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 17700609 - 17700332
Alignment:
Q  8 gtggatgataatgagaaggtgaaggaacaaggtgtgctgctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaag 107  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17700609 gtggatgataatgagaagatgaaggaacaaggtgtgcttctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaag 17700510  T
Q  108 acacgatttttcaaacatcacaagattccaaggaactagcaggctctaaccttgatattgaaggcatgaagaatgttagcaaagatgaaaccgaattagg 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17700509 acacgatttttcaaacatcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagctaagatgaaaccgaattagg 17700410  T
Q  208 gtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaaacaattagtgtttctt 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17700409 gtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgattttgaagatgaaaacaattagtgtttctt 17700332  T

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Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 17663370 - 17663647
Alignment:
Q  8 gtggatgataatgagaaggtgaaggaacaaggtgtgctgctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaag 107  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663370 gtggatgataatgagaagatgaaggaacaaggtgtgcttctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaag 17663469  T
Q  108 acacgatttttcaaacatcacaagattccaaggaactagcaggctctaaccttgatattgaaggcatgaagaatgttagcaaagatgaaaccgaattagg 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17663470 acacgatttttcaaacatcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagcgaagatgaaaccgaattagg 17663569  T
Q  208 gtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaaacaattagtgtttctt 285  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  17663570 gtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgtttctt 17663647  T

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Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 55 - 280
Target Start/End: Complemental strand, 21899355 - 21899130
Alignment:
Q  55 gtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaactagcaggctct 154  Q
    ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||| |||||| |||| ||| ||||||| ||||||||  | || ||||    
T  21899355 gtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcctaaagacaagattttacaaaaatcgcaagattgcaaggaacctgtagactct 21899256  T
Q  155 aaccttgatattgaaggcatgaagaatgttagcaaagatgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatg 254  Q
    |||| |||||||||||||| ||| ||  ||||| ||| |||||||||||||||||||||||||   | |||| |||||||||||||| || ||| ||| |    
T  21899255 aaccatgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatgaattttgatttgaatgagatttcaagtgacg 21899156  T
Q  255 attttgaagatgaaaacaattagtgt 280  Q
    ||||||||||||||| ||||||||||    
T  21899155 attttgaagatgaaaccaattagtgt 21899130  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 38227198 - 38227135
Alignment:
Q  193 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgat 256  Q
    |||||| ||||||||||||| |||||| | ||||||||||||||| |||||||||| |||||||    
T  38227198 tgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 21899693 - 21899653
Alignment:
Q  20 gagaaggtgaaggaacaaggtgtgctgctaacaaggtgtgt 60  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  21899693 gagaagatgaaggaacaaggtgtgctgctaacaaggtgtgt 21899653  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 22663827 - 22663781
Alignment:
Q  97 gattcctaaagacacgatttttcaaacatcacaagattccaaggaac 143  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  22663827 gattcctaaagacaagatttttcaaacatcacaaaattgcaaggaac 22663781  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 22666860 - 22666782
Alignment:
Q  9 tggatgataatgagaaggtgaaggaacaaggtgtgctgctaacaaggtgtgtttgccacaacgaaaagaacttggtgct 87  Q
    |||||||||||| |||| |||||||||||  |||| | |||||||||||||||| ||||||  ||||  ||||||||||    
T  22666860 tggatgataatgtgaagatgaaggaacaacatgtgatactaacaaggtgtgtttcccacaatcaaaaacacttggtgct 22666782  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 38227270 - 38227194
Alignment:
Q  193 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaa 269  Q
    |||||| ||||||||||||| |||||| | ||||||||||||||| |||||| ||| ||| |||  ||||| |||||    
T  38227270 tgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagtgacgataatgaaggtgaaa 38227194  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 285
Target Start/End: Complemental strand, 51220189 - 51220005
Alignment:
Q  97 gattcctaaagacacgatttttcaaacatcacaagattccaaggaactagcaggctctaaccttgatattgaaggcatgaagaatgttagcaaagatgaa 196  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||  |    ||||||   |||||||||||  | |||||   ||| | ||  ||||    
T  51220189 gattcctaaagaca-gatttttcaaacatcacaagattgcaaggaacatgactcctctaataatgatattgaagagaagaaga---ttaacgaaagtgaa 51220094  T
Q  197 accgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaaacaattagtgtttctt 285  Q
    || ||||||||||||| |||||| | |||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  51220093 actgaattagggtcaatagttgttatgaattttgattcgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgtctctt 51220005  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 35250241 - 35250154
Alignment:
Q  193 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaaacaattagtgt 280  Q
    |||||| ||| | ||||||| |||||| | |||| |||||||||| |||||| ||| |||||||||||||||||||  ||||||||||    
T  35250241 tgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgt 35250154  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 51220884 - 51220797
Alignment:
Q  193 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaaacaattagtgt 280  Q
    |||||| ||||||||||||| | |||| | |||| |||| ||||| |||||||||| ||||| |||||||||||||| ||| ||||||    
T  51220884 tgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagtgatggttttgaagatgaaaccaactagtgt 51220797  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 440984 - 440899
Alignment:
Q  200 gaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaaatgatgattttgaagatgaaaacaattagtgtttctt 285  Q
    ||||||||| ||| |||||| | |||| |||||||||| |||||||||| |||||| |||||||||||||  ||||||||| ||||    
T  440984 gaattagggccaaaagttgtgaagaattttgatttgaacgagcttccaagtgatgactttgaagatgaaactaattagtgtctctt 440899  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 441120 - 441038
Alignment:
Q  61 ttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaac 143  Q
    ||||||||| |||||||| |||| | ||| ||| |  ||||||||||  | ||||||||||||||||||||||| ||||||||    
T  441120 ttgccacaatgaaaagaagttggcgttgaggttcaaaattcctaaaggtaagatttttcaaacatcacaagattgcaaggaac 441038  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 44989244 - 44989308
Alignment:
Q  63 gccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatca 127  Q
    ||||||| ||||| ||||||||| ||| ||||| || ||||||||||| ||||||||||||||||    
T  44989244 gccacaatgaaaacaacttggtgttgaggttgaagaatcctaaagacaagatttttcaaacatca 44989308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 44989884 - 44989794
Alignment:
Q  79 cttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaactagcaggctctaaccttgatattgaa 169  Q
    ||||||||||| | |||  | ||||||||| | |||||||| |||||||||||||| ||||||||  | ||||||||| | ||||||||||    
T  44989884 cttggtgctgaggctgaataatcctaaagagaagatttttctaacatcacaagattgcaaggaacctgaaggctctaatcatgatattgaa 44989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 44989154 - 44989199
Alignment:
Q  9 tggatgataatgagaaggtgaaggaacaaggtgtgctgctaacaag 54  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  44989154 tggatgataatgagaagatgaaggagcaaggtgtgttgctaacaag 44989199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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