View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_high_16 (Length: 288)
Name: NF11878_high_16
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 37315818 - 37315569
Alignment:
| Q |
4 |
cgtggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgtttctcttgtagtttcaactgcttttgatcatgctt |
103 |
Q |
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| T |
37315818 |
cgtggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgtttctcttgtagtttcaactgcttttgatcatgctt |
37315719 |
T |
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| Q |
104 |
ttaaggctccgccttataaagttgacgctgcagcttcactcgtacccgaagctgattatgtttggagaatcattctcatgtttggtgctgttcctgctgg |
203 |
Q |
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| T |
37315718 |
ttaaggctccaccttataaagttgacgctgcagcttcacttgtaccagaagctgattatgtttggagaatcattctcatgtttggtgctgttcctgctgg |
37315619 |
T |
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| Q |
204 |
tttaacttactattggcgtatgaaaatgcccgagacagcaaggtacgcac |
253 |
Q |
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| T |
37315618 |
tttaacttactattggcgtatgaaaatgcccgagacagcaaggtacgcac |
37315569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 28817402 - 28817350
Alignment:
| Q |
181 |
atgtttggtgctgttcctgctggtttaacttactattggcgtatgaaaatgcc |
233 |
Q |
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| T |
28817402 |
atgtttggtgctgttcctgcagcattaacttactattggagaatgaaaatgcc |
28817350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 16174948 - 16174862
Alignment:
| Q |
156 |
tgattatgtttggagaatcattctcatgtttggtgctgttcctgctggtttaacttactattggcgtatgaaaatgcccgagacagc |
242 |
Q |
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| T |
16174948 |
tgattatgtttggagacttattcttatgttcggtgctcttccagctgcattgacgtactactggcgaatgaaaatgccagaaacagc |
16174862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 16184414 - 16184500
Alignment:
| Q |
156 |
tgattatgtttggagaatcattctcatgtttggtgctgttcctgctggtttaacttactattggcgtatgaaaatgcccgagacagc |
242 |
Q |
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| T |
16184414 |
tgattatgtttggagacttattcttatgttcggcgctcttcctgctgcattgacgtactactggcgaatgaaaatgccagaaacagc |
16184500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 16223804 - 16223890
Alignment:
| Q |
156 |
tgattatgtttggagaatcattctcatgtttggtgctgttcctgctggtttaacttactattggcgtatgaaaatgcccgagacagc |
242 |
Q |
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| T |
16223804 |
tgattatgtttggagacttattcttatgttcggtgctcttccagctgcattgacgtactactggcgaatgaaaatgccagaaacagc |
16223890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 30620619 - 30620561
Alignment:
| Q |
4 |
cgtggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtgg |
62 |
Q |
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| T |
30620619 |
cgtggtgcgtttatagctgcagtttttgctatgcagggttttggaattttagcaggtgg |
30620561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 32666939 - 32666895
Alignment:
| Q |
13 |
tttatagcttcggtttttgctatgcaagggtttggaattttggct |
57 |
Q |
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| T |
32666939 |
tttatagctgcggttttttctatgcaagggtttggtatattggct |
32666895 |
T |
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