View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11878_high_17 (Length: 288)

Name: NF11878_high_17
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11878_high_17
NF11878_high_17
[»] chr2 (9 HSPs)
chr2 (18-270)||(8271021-8271265)
chr2 (31-183)||(44440421-44440573)
chr2 (32-153)||(45036059-45036180)
chr2 (31-201)||(4653680-4653850)
chr2 (18-175)||(6571013-6571170)
chr2 (127-260)||(22540152-22540277)
chr2 (31-90)||(37193005-37193064)
chr2 (218-261)||(6570939-6570982)
chr2 (208-263)||(32864547-32864602)
[»] chr8 (7 HSPs)
chr8 (18-186)||(1758589-1758757)
chr8 (32-190)||(15243479-15243637)
chr8 (31-189)||(12563278-12563435)
chr8 (34-263)||(12607938-12608161)
chr8 (31-168)||(28932216-28932353)
chr8 (31-200)||(36128107-36128272)
chr8 (121-190)||(12597120-12597189)
[»] chr4 (10 HSPs)
chr4 (32-201)||(47924230-47924399)
chr4 (31-186)||(41940522-41940675)
chr4 (31-201)||(27184725-27184900)
chr4 (58-193)||(50945979-50946114)
chr4 (52-188)||(11371615-11371750)
chr4 (31-189)||(25969738-25969893)
chr4 (55-183)||(6450481-6450609)
chr4 (18-189)||(40656116-40656287)
chr4 (23-201)||(54259361-54259538)
chr4 (23-80)||(24016019-24016076)
[»] scaffold0013 (1 HSPs)
scaffold0013 (31-201)||(54719-54889)
[»] chr7 (14 HSPs)
chr7 (32-193)||(5464526-5464687)
chr7 (32-201)||(5949527-5949696)
chr7 (31-190)||(27046122-27046281)
chr7 (45-190)||(12501680-12501825)
chr7 (45-184)||(12527314-12527453)
chr7 (31-175)||(25828382-25828525)
chr7 (31-268)||(10328867-10329100)
chr7 (127-201)||(41029412-41029486)
chr7 (109-189)||(23810064-23810144)
chr7 (146-190)||(13278638-13278682)
chr7 (121-175)||(31443636-31443690)
chr7 (218-263)||(5949473-5949518)
chr7 (218-263)||(13278702-13278747)
chr7 (33-73)||(36817451-36817491)
[»] chr1 (11 HSPs)
chr1 (33-187)||(16824076-16824230)
chr1 (18-187)||(11075832-11076001)
chr1 (31-202)||(2887553-2887724)
chr1 (31-182)||(9427721-9427872)
chr1 (31-201)||(18565853-18566023)
chr1 (49-182)||(8266770-8266902)
chr1 (18-190)||(39997470-39997642)
chr1 (31-186)||(3620854-3621009)
chr1 (140-187)||(43684369-43684416)
chr1 (121-201)||(28279966-28280044)
chr1 (125-175)||(7859419-7859469)
[»] chr3 (7 HSPs)
chr3 (31-201)||(17508713-17508883)
chr3 (31-193)||(7320142-7320303)
chr3 (31-190)||(50425970-50426129)
chr3 (87-199)||(53589979-53590091)
chr3 (68-192)||(10877654-10877778)
chr3 (31-157)||(43445465-43445591)
chr3 (28-189)||(51160857-51161021)
[»] chr6 (7 HSPs)
chr6 (31-201)||(2443310-2443485)
chr6 (31-177)||(29047244-29047389)
chr6 (26-186)||(10992847-10993000)
chr6 (121-193)||(6863505-6863573)
chr6 (218-259)||(17915123-17915164)
chr6 (217-259)||(3036763-3036805)
chr6 (34-96)||(32203511-32203573)
[»] chr5 (5 HSPs)
chr5 (127-185)||(38697442-38697500)
chr5 (31-160)||(12291789-12291918)
chr5 (127-186)||(1362547-1362608)
chr5 (31-85)||(12292013-12292067)
chr5 (70-131)||(38697523-38697584)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 8271265 - 8271021
Alignment:
Q  18 attactgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaat--acaacactggttca 115  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||  |||||| |||||||    
T  8271265 attactgctggttgtgatcataccttgcacacttatgttactgacgtccttcatattagagatgctttacatgaaaatggaaatacacaacagtggttca 8271166  T
Q  116 tatttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctctgcggctctgcctc 215  Q
    | || ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |        ||| ||||     
T  8271165 tgttcttagggaacaaaatatgtatgcagattttatggctaaggaagaatcacatgcaagatgctatgctcactggaattgcc--------ctccgcctg 8271074  T
Q  216 atatggaatgtctcatcttgagagataagcttggaatttaatttcgtccttttcc 270  Q
    |||||||||||||||||||  |||||||| || ||||||||||||||||||||||    
T  8271073 atatggaatgtctcatctt--gagataagtttagaatttaatttcgtccttttcc 8271021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 44440421 - 44440573
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||| || ||||| ||||    
T  44440421 gtgatcataccttgcacacttatgctactaacatccttcatattagagatgttttacatgaaaatgaaaatacaacattggtgcatgttcttagggaaca 44440520  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctg 183  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  44440521 aaatatgtgtgcagattttatggttaaggaaggatcacatgcaagttgctctg 44440573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 45036180 - 45036059
Alignment:
Q  32 tgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaa 131  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| | || ||| || ||||| |||||    
T  45036180 tgatcataccttgcacacttatgctactgacatccttcatattagagatgttttacatgaaaatgaaaatacaacattagtgcatgttcttagggaacaa 45036081  T
Q  132 aatatgtgtgcagattttatgg 153  Q
    || ||||||||| |||||||||    
T  45036080 aacatgtgtgcaaattttatgg 45036059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 4653680 - 4653850
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||| ||||||||||||||| || || ||||||||| ||||  | |||||| |||||||||||| | | |||| ||| || | |   ||||    
T  4653680 gtgatcataccttacacacttatgctactaacatctttcatattaaagatgctctacatggaaatggaaatactatattggtacatgttctcatagaaca 4653779  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| || |||||||    
T  4653780 aaatatgtgtgcaaattttatggctaaggaaggatcacatacaaggtgctctgctcactggaagtgtcctc 4653850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 6571170 - 6571013
Alignment:
Q  18 attactgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcata 117  Q
    |||| |||| || ||||||||| ||| |||||||||||||||||| |||||||||||||||||  ||| |||| |||| ||||||||| | | || |||     
T  6571170 attattgctggtcgtgatcataacttacacacttatgctactgacatccttcatattagagatgctttgcatggaaatagaaatacaatattagtacatg 6571071  T
Q  118 tttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaag 175  Q
    || ||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||    
T  6571070 ttcttagggaacaaaatacgtgtgcagattttatgactaaggaaggatcgcatgcaag 6571013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 22540152 - 22540277
Alignment:
Q  127 aacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctctgcggctctgcctcatatggaatgt 226  Q
    |||||||||| ||||||||||||||| |||||||||  |||||| |||| ||||||| || ||| ||||| |        ||| |||| ||||||||| |    
T  22540152 aacaaaatatatgtgcagattttatgactaaggaagagtcacatacaaggtgctctgttcgctggaattgcc--------ctccgcctgatatggaatct 22540243  T
Q  227 ctcatcttgagagataagcttggaatttaatttc 260  Q
    |||||| |||||||||| ||||||| ||||||||    
T  22540244 ctcatcctgagagataaacttggaacttaatttc 22540277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 37193005 - 37193064
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatg 90  Q
    ||||||||| |||||||| |||||||||| || ||||||||||||||||| |||||||||    
T  37193005 gtgatcatatcttgcacatttatgctacttacatccttcatattagagatgttttacatg 37193064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 6570982 - 6570939
Alignment:
Q  218 atggaatgtctcatcttgagagataagcttggaatttaatttcg 261  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||    
T  6570982 atggaatctctcatcctgagagataagcttggaacttaatttcg 6570939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 32864602 - 32864547
Alignment:
Q  208 tctgcctcatatggaatgtctcatcttgagagataagcttggaatttaatttcgtc 263  Q
    ||||||| | ||||||| || |||||||||||||||| ||| ||||||||||||||    
T  32864602 tctgcctgaaatggaatctcgcatcttgagagataagtttgaaatttaatttcgtc 32864547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 1758757 - 1758589
Alignment:
Q  18 attactgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcata 117  Q
    |||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||  ||||||||||||||||||||||||| || | |||     
T  1758757 attattgctagttgtgatcataccttgcacacttatgccactaacatccttcatattagagatgatttacatgaaaatggaaatacaacattgatgcatg 1758658  T
Q  118 tttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctc 186  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1758657 ttcttaggggacaaaatatatgtgcagattttatggctaaggaacgatcacatgcaagatgctctgctc 1758589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 15243479 - 15243637
Alignment:
Q  32 tgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaa 131  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| |||||| |||| ||| || ||||| |||||    
T  15243479 tgatcataccttgcacacttatgctactcacatccttcatattagagatgttttacatgaaaatgaaaaaacaacattggtgcatgttcttagggaacaa 15243578  T
Q  132 aatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
     | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  15243579 tacatgtgtgcatattttatggctaaggaaggatcacatgcaaggtgctctgctcactg 15243637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 12563278 - 12563435
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||| ||| ||||||||||||| ||| ||||||||| |||||||  |||||||| ||||| |||||||||| |||| ||| ||||||||||| |    
T  12563278 gtgatcatactttgaacacttatgctaccgacatccttcataatagagattctttacatggaaatgaaaatacaacattggtgcatgtttttaggaaa-a 12563376  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcact 189  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  12563377 aaatatgtgtgcagattttatggttaaggaaggatcacatgcaaggtgctatgctcact 12563435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 263
Target Start/End: Original strand, 12607938 - 12608161
Alignment:
Q  34 atcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaa 133  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||  |||||||| |||||||||||||||| |||| ||| ||  || | |||||||    
T  12607938 atcatatcttgcacacttatgctactgacatccttcatattagagatggtttacatggaaatggaaatacaacattggtgcatgttcataaggaacaaaa 12608037  T
Q  134 tatgtgtgcagattttatggctaaggaaggatcacatg--caagatgctctgctcactgaaattgtcctctgcggctctgcctcatatggaatgtctcat 231  Q
    ||||||||||||||||||||||||||||||||||||||   ||| ||||||||||| || || || |||| |    ||||    | | ||||| ||||||    
T  12608038 tatgtgtgcagattttatggctaaggaaggatcacatgtaaaaggtgctctgctcattggaactgccctccg----tctg----acacggaatctctcat 12608129  T
Q  232 cttgagagataagcttggaatttaatttcgtc 263  Q
    | |||||||||||||||||| |||||||||||    
T  12608130 cctgagagataagcttggaacttaatttcgtc 12608161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 28932353 - 28932216
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||  | |||||| || ||||||||||||| |||| ||| || ||||  ||||    
T  28932353 gtgatcataccttgcacacttatactactgacatccttcatattaaagatgctctacatggaagtggaaatacaacattggtgcatgttcttagagaaca 28932254  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcac 168  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  28932253 aaatatgtgtgtagattttatggctaaggaaagatcac 28932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 36128107 - 36128272
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||| ||| || ||||||| ||||||| ||||| |||||||||||| | ||||| |||||| ||||| |||| |||| ||| ||    || ||||    
T  36128107 gtgatcataacttacatacttatgttactgacatcctttatattagagatcctatacataaaaatgaaaatataacattggtgcatgtt----gggaaca 36128202  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcct 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||    
T  36128203 aaatatgtgtgcaaattttatggctaaggaaagatcacatgcaaggtgctctgctcactaaaactgtcct 36128272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 12597120 - 12597189
Alignment:
Q  121 ttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||    
T  12597120 ttagggaacaaaatatgtgtgcagattttatggctaaggaaggatcacattcaaggtgttctgcttactg 12597189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 47924399 - 47924230
Alignment:
Q  32 tgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaa 131  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||| |||||| | ||  |||||    
T  47924399 tgatcataccttgcacacttatgctactgacatccttcatattcgagatgttttacatgaaaatggaaatataacattggtgcatattctcagcgaacaa 47924300  T
Q  132 aatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    || |||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||    
T  47924299 aacatgtgtgctgattttatggctaagtaaggatcatatgcaaggtgctctgctcactgaaattgccctc 47924230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 41940675 - 41940522
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||| ||||||||| || | ||| || ||||| ||||    
T  41940675 gtgatcataccttgcacacttatgctaccgacatccttcatattagagatgttttacatggaaatggtaatacaacattgatgcatgttcttagggaaca 41940576  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctc 186  Q
    |||||  |||||| ||||||||||||||||||||||||||||||| || |||||||    
T  41940575 aaata--tgtgcaaattttatggctaaggaaggatcacatgcaaggtgttctgctc 41940522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 27184900 - 27184725
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgt-----ccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttagg 125  Q
    ||||||||||||||||||| |||||||||||| |     |||||||||||||||| |||||||||||||||| ||||||||| |  | ||| ||  ||||    
T  27184900 gtgatcataccttgcacacatatgctactgacatgacatccttcatattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagg 27184801  T
Q  126 aaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
     |||||||||||| || | |||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||    
T  27184800 gaacaaaatatgtatgtatattttatggctaaggaaggatcacgtgcaatgtgctctgctcactggaattgtcctc 27184725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 50945979 - 50946114
Alignment:
Q  58 ctgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcagattttatggctaa 157  Q
    ||||| |||| || ||||||||| ||||||||||||||| |||||||||| || | ||| |||||||  ||||||||||| ||| ||||||||| |||||    
T  50945979 ctgacatcctccacattagagatgttttacatgaaaatgaaaatacaacattgatgcatgtttttagagaacaaaatatgcgtgtagattttattgctaa 50946078  T
Q  158 ggaaggatcacatgcaagatgctctgctcactgaaa 193  Q
    ||||||||||||||||||||||||||||||||||||    
T  50946079 ggaaggatcacatgcaagatgctctgctcactgaaa 50946114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 11371615 - 11371750
Alignment:
Q  52 atgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcagattttat 151  Q
    |||| |||||| || ||||||||||||||  |||||||| |||||||||||||||| |||| ||| || ||||||| |||||||||||||||||||||||    
T  11371615 atgcgactgacatcgttcatattagagattatttacatggaaatggaaatacaacattggtgcatgttcttaggaa-caaaatatgtgtgcagattttat 11371713  T
Q  152 ggctaaggaaggatcacatgcaagatgctctgctcac 188  Q
    |||||||||| ||||| ||||||| ||||||||||||    
T  11371714 ggctaaggaatgatcaaatgcaaggtgctctgctcac 11371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 25969738 - 25969893
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||| ||| || ||| | ||||    
T  25969738 gtgatcataccttacacacttatgccaatgacgtccttcatattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttaaggaaca 25969837  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcact 189  Q
    ||||||||||||| ||||||| |||   |||| |||||||||||| || ||||||||||    
T  25969838 aaatatgtgtgcatattttatagct---gaagaatcacatgcaaggtgttctgctcact 25969893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 6450481 - 6450609
Alignment:
Q  55 ctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcagattttatggc 154  Q
    |||||||| | ||| |||||||||||  ||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||| |||||||||||     
T  6450481 ctactgacattctttatattagagatgatttacatgaaaatggaaatacaacagtggttcatgttcttagggaacaaaatatgtgtgtagattttatggt 6450580  T
Q  155 taaggaaggatcacatgcaagatgctctg 183  Q
    ||||||   ||||||||||||||||||||    
T  6450581 taaggataaatcacatgcaagatgctctg 6450609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 40656287 - 40656116
Alignment:
Q  18 attactgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcata 117  Q
    |||| |||| || ||||||||||||||||||||||| ||||| || |  ||||||| |||||| ||||||||| |||||||||||| ||| |||| |||     
T  40656287 attattgctggtcgtgatcataccttgcacacttatactactaacatatttcatatcagagatgttttacatggaaatggaaatacgacattggtgcatg 40656188  T
Q  118 tttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcact 189  Q
    || | ||  |||||||||||||||||||||||||| ||||||||| |||| |||| || |||| ||||||||    
T  40656187 ttctaagagaacaaaatatgtgtgcagattttatgactaaggaagaatcatatgcgaggtgctatgctcact 40656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 54259361 - 54259538
Alignment:
Q  23 tgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatattttt 122  Q
    |||| |||||||| ||| | | |||||||||| ||||||  |||||| || |||||||  |||||||| |||||||||||||||| |||  ||| || ||    
T  54259361 tgctggttgtgatgataacctacacacttatgttactgatatccttcgtaatagagatgatttacatggaaatggaaatacaacattggagcatgttctt 54259460  T
Q  123 aggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    ||| ||||||||||||||||| |||| ||||||||  |||||||||||||| | ||||||||| | ||||| |||||||    
T  54259461 agggaacaaaatatgtgtgcaaatttcatggctaa-aaaggatcacatgcacggtgctctgctgagtgaaactgtcctc 54259538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 24016019 - 24016076
Alignment:
Q  23 tgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagat 80  Q
    |||| |||||||||||||||| |||||||||| || | || || ||||||||||||||    
T  24016019 tgcttgttgtgatcataccttacacacttatgttattaacatcgttcatattagagat 24016076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 54889 - 54719
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||||||| ||||||||| |||||| ||||||||| || | ||| |||||||| ||||    
T  54889 gtgatcataccttgcacatttatgttgctgacatccttcatattagagatgttttacatggaaatggtaatacaacattgttgcatgtttttagggaaca 54790  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| || |||||||    
T  54789 aaatatgtgtgcagactttatggctaaggaagaatcacatgcaaggtgctctgctcactggaactgtcctc 54719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 5464687 - 5464526
Alignment:
Q  32 tgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaa 131  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||| ||||||||| ||||||||||| |||| |||| |||||| || || |||||    
T  5464687 tgatcataccttgcacacttatgctactagcatccttcatattagagatgttttacatggaaatggaaatagaacattggtgcatattcttggggaacaa 5464588  T
Q  132 aatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaa 193  Q
    ||||  |||||||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  5464587 aatacatgtgcagattttatggctaaggaaggatcacatgcaaggtgctttggtcactgaaa 5464526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 5949696 - 5949527
Alignment:
Q  32 tgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaa 131  Q
    |||||||||||||||||||||| ||||  || ||||||||||| ||||| |||||||||||||||||||||||||| |||| ||| || ||||| |||||    
T  5949696 tgatcataccttgcacacttatactaccaacatccttcatattcgagatattttacatgaaaatggaaatacaacattggtgcatgttcttagggaacaa 5949597  T
Q  132 aatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    || |||||||  ||||||| ||||||| |||||||||||||||| | |||| ||||||| ||||| ||||    
T  5949596 aacatgtgtgttgattttacggctaagaaaggatcacatgcaaggtactctactcactggaattgccctc 5949527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 27046281 - 27046122
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||| |||||||||||||| | | ||||||||||||||||| ||||||||| ||||| |||||||||| |||| ||| || ||| | ||||    
T  27046281 gtgatcataccttacacacttatgctaccgtcatccttcatattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttatggaaca 27046182  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
    ||||| ||| ||| ||||| || |||||||||||||||||||||| ||||||||||||||    
T  27046181 aaatacgtgggcaaattttgtgactaaggaaggatcacatgcaaggtgctctgctcactg 27046122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 12501680 - 12501825
Alignment:
Q  45 cacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcag 144  Q
    ||||||||| ||||| || ||||||||||||||||  |||||||||||||||||||||||||| |||| ||| || |||||  |||||| ||||||||||    
T  12501680 cacacttattctacttacatccttcatattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcag 12501779  T
Q  145 attttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
    |||||||||||||||| ||||  |||||||| ||||||||||||||    
T  12501780 attttatggctaaggacggattgcatgcaaggtgctctgctcactg 12501825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 12527314 - 12527453
Alignment:
Q  45 cacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcag 144  Q
    ||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||| |||| ||| || |||||  |||||| ||||||||||    
T  12527314 cacacttatgctactaacatccttcatattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcag 12527413  T
Q  145 attttatggctaaggaaggatcacatgcaagatgctctgc 184  Q
    |||||||||||||||| ||||  |||||||| ||||||||    
T  12527414 attttatggctaaggacggattgcatgcaaggtgctctgc 12527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 25828525 - 25828382
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||||||||| | |||||||| |||| |||||||||||| ||||  | ||||||||||||||||||||||| |||| ||| || ||| | |||     
T  25828525 gtgatcataccttgcagagttatgctattgacatccttcatattaaagatgctctacatgaaaatggaaatacaacattggtgcatgttattacg-aacg 25828427  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaag 175  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25828426 aaatatgtgtgcagattttatgtctaaggaaggatcacatgcaag 25828382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 268
Target Start/End: Complemental strand, 10329100 - 10328867
Alignment:
Q  31 gtgatcataccttgcacacttat----gctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttagga 126  Q
    |||||||||||||||||||||||    |||| |||| |  |||| |||||||||  |||||||| |||||| || |||||| |||| ||| || |||||     
T  10329100 gtgatcataccttgcacacttatatatgctattgacatttttcacattagagatgctttacatggaaatgggaacacaacattggtgcatgttcttaggg 10329001  T
Q  127 aacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctctgcggctctgcctcatatggaatgt 226  Q
    ||||||||||||||||| ||||||| |  |||||||||||||||||||  |||||||||||||| ||   ||        ||| |||| | ||||||| |    
T  10329000 aacaaaatatgtgtgcaaattttatagtgaaggaaggatcacatgcaaagtgctctgctcactggaaccatc--------ctccgcctgacatggaatct 10328909  T
Q  227 ctcatcttgagagataagcttggaatttaatttcgtcctttt 268  Q
    |||||| |||||||||| ||||||| ||||||||||| ||||    
T  10328908 ctcatcctgagagataaacttggaacttaatttcgtcttttt 10328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 41029412 - 41029486
Alignment:
Q  127 aacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||| || || |||||||    
T  41029412 aacaaaatatgtgtgtagattttatggctaaggaagggtcacatacaaggtgctctgctcattggaactgtcctc 41029486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 23810064 - 23810144
Alignment:
Q  109 tggttcatatttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcact 189  Q
    |||| |||||| ||||| || |||| ||||||| | ||||||||| ||| ||| |||||||||||||||||||||||||||    
T  23810064 tggtgcatattcttagggaataaaacatgtgtgaaaattttatggataaagaatgatcacatgcaagatgctctgctcact 23810144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 13278638 - 13278682
Alignment:
Q  146 ttttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  13278638 ttttatggctaaggaaggatgacatgcaaggtgctctgctcactg 13278682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 31443636 - 31443690
Alignment:
Q  121 ttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaag 175  Q
    ||||| || |||||||||||| ||||||||||||||||||| ||| |||||||||    
T  31443636 ttagggaataaaatatgtgtgtagattttatggctaaggaatgattacatgcaag 31443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 5949518 - 5949473
Alignment:
Q  218 atggaatgtctcatcttgagagataagcttggaatttaatttcgtc 263  Q
    ||||||| ||||||  |||||||||||||||||| |||||||||||    
T  5949518 atggaatctctcattctgagagataagcttggaacttaatttcgtc 5949473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 13278702 - 13278747
Alignment:
Q  218 atggaatgtctcatcttgagagataagcttggaatttaatttcgtc 263  Q
    ||||||| ||||||| |||||||||| ||||||| |||||||||||    
T  13278702 atggaatctctcatcctgagagataaccttggaacttaatttcgtc 13278747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 36817491 - 36817451
Alignment:
Q  33 gatcataccttgcacacttatgctactgacgtccttcatat 73  Q
    ||||||||||||||||||||||||||| || | ||||||||    
T  36817491 gatcataccttgcacacttatgctactaacatacttcatat 36817451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 16824230 - 16824076
Alignment:
Q  33 gatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaa 132  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||  |||||||||||||| |||||||||| |||  ||| || ||||| ||||||    
T  16824230 gatcatactttgcacacttatgctactgacatccttcatattagagatgctttacatgaaaatgaaaatacaacattggcgcatgttcttagggaacaaa 16824131  T
Q  133 atatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctca 187  Q
    |||||||| || |||||||||||||| |||||||||||||||| |||||||||||    
T  16824130 atatgtgtacaaattttatggctaagaaaggatcacatgcaaggtgctctgctca 16824076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 11075832 - 11076001
Alignment:
Q  18 attactgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcata 117  Q
    |||| |||| || ||||||||||||||||||||||||||||| || |||||||||||| ||||  ||||||||||||||||||||||||| |||| |||     
T  11075832 attattgcttgtcgtgatcataccttgcacacttatgctactaacatccttcatattaaagatgctttacatgaaaatggaaatacaacattggtgcatg 11075931  T
Q  118 tttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctca 187  Q
    ||  ||   ||||||||||||||| || ||||||||||||||||| |||||||||||  | |||||||||    
T  11075932 ttcctaacgaacaaaatatgtgtgtaggttttatggctaaggaagaatcacatgcaaagtactctgctca 11076001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 2887553 - 2887724
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttagg-aaac 129  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||  |||| ||| ||||| |||||||||| |||| ||| |||| ||| ||||    
T  2887553 gtgatcatac-ttgcacacttatgctactgtcatccttcatattagagatgatttatatggaaatgaaaatacaacattggtgcatgttttaaggaaaac 2887651  T
Q  130 aaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctct 202  Q
    |||||||||||| | |||||||||  ||||||||||| |||||||| ||||||||||||  || |||||||||    
T  2887652 aaaatatgtgtgtaaattttatggtcaaggaaggatctcatgcaaggtgctctgctcacaaaatttgtcctct 2887724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 9427721 - 9427872
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |||||| ||||||| | |||  ||| || ||||| ||||    
T  9427721 gtgatcataccttgcacatttatactactgacatccttcatattagagatgttttacatggaaatggtaatacaagattggcgcatgttcttagggaaca 9427820  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctct 182  Q
    ||||  || || |||||||| | |||||||||||||||||||||| ||||||    
T  9427821 aaattcgtatgtagattttacgactaaggaaggatcacatgcaaggtgctct 9427872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 18565853 - 18566023
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||| |||| |||||||||||||||| |||| | |||||||||||||||  ||||| ||||||| | ||||||||| |||| ||| || ||||| ||||    
T  18565853 gtgattatacattgcacacttatgctattgacatacttcatattagagatgctttacttgaaaatagtaatacaacattggtgcatgttcttagggaaca 18565952  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    ||| || |||| ||||||||||| ||||||| ||||| ||||||  |||||||||| ||| ||||| ||||    
T  18565953 aaacatatgtgtagattttatggttaaggaatgatcatatgcaaagtgctctgctcgctggaattgccctc 18566023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 8266770 - 8266902
Alignment:
Q  49 cttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcagattt 148  Q
    |||||||||||||| ||||| |||||| |||| ||||||||| |||||| ||||||||| |||| ||| || ||||| |||||||||  |||||||||||    
T  8266770 cttatgctactgacatcctt-atattaaagatgttttacatggaaatggtaatacaacattggtgcatgttcttagggaacaaaatacttgtgcagattt 8266868  T
Q  149 tatggctaaggaaggatcacatgcaagatgctct 182  Q
    ||||||||| ||| ||||||||||||| ||||||    
T  8266869 tatggctaaagaaagatcacatgcaaggtgctct 8266902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 39997642 - 39997470
Alignment:
Q  18 attactgctagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcata 117  Q
    |||| |||| || |||||||||||||||| |||||||||||| || | | |||||||||||||  ||| ||||  ||| |||| |||||| || | |||     
T  39997642 attattgctggtcgtgatcataccttgcaaacttatgctacttacattcatcatattagagatgctttccatgggaatagaaacacaacattgatgcatg 39997543  T
Q  118 tttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
    || ||||| | ||||||||||||||| ||||||||||||||||| |||||||| |||| ||||| ||||||||    
T  39997542 ttcttagggagcaaaatatgtgtgcaaattttatggctaaggaatgatcacatccaaggtgctcggctcactg 39997470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 3621009 - 3620854
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||| || ||||||| ||||||| ||||||||||||||||| ||||||||| |||||  || || ||| | || ||| || ||||  ||||    
T  3621009 gtgatcataccttacatacttatgttactgacatccttcatattagagatattttacatggaaatgataacactacattagtgcatgttcttagagaaca 3620910  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctc 186  Q
    ||| |||||| || |||||||||||||||| | ||| ||| ||||||| |||||||    
T  3620909 aaacatgtgtacaaattttatggctaaggaggaatcgcattcaagatgttctgctc 3620854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 43684416 - 43684369
Alignment:
Q  140 tgcagattttatggctaaggaaggatcacatgcaagatgctctgctca 187  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  43684416 tgcagattttatggctaaggaatgatcacatgtaaggtgctctgctca 43684369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 28279966 - 28280044
Alignment:
Q  121 ttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    ||||| ||||||||||||||||| ||||||||| |||  || ||||||||||||| ||||||  ||||||||||| |||||    
T  28279966 ttagggaacaaaatatgtgtgca-attttatggttaaa-aatgatcacatgcaagttgctctattcactgaaattatcctc 28280044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 7859419 - 7859469
Alignment:
Q  125 gaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaag 175  Q
    ||||||||||||||||||| | |||||||||||||| | | ||||||||||    
T  7859419 gaaacaaaatatgtgtgcaaactttatggctaaggaggaaacacatgcaag 7859469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 17508713 - 17508883
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||| |||| ||| || ||||| ||||    
T  17508713 gtgatcatacgttgcatacttatgctactgacatccttcatattagagatgttttacatgaaaacggtaatacaacattggtgcatgttcttagggaaca 17508812  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
    |||||||| |||| ||||||| | | ||||||||||||||||||| ||||||||| |||| || |||||||    
T  17508813 aaatatgtttgcatattttatagtttaggaaggatcacatgcaaggtgctctgcttactggaactgtcctc 17508883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 7320303 - 7320142
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||| ||||||||||||||||  ||| ||||||||||||||| |  |||||||| |||||||||||||| | |||| |||  | ||||||| ||    
T  7320303 gtgatcatacattgcacacttatgctatcgacatccttcatattagagttgctttacatggaaatggaaatacaatattggtgcatgctcttaggaa-ca 7320205  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaa 193  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| || |||||||| |||||    
T  7320204 aaatatgtgtgcagattttatggctaagaaaggatctcatgcaaggtgatctgctcattgaaa 7320142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 50425970 - 50426129
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||||||| |||||||||  |||||| ||||||||| |||||||  |||||| | ||||| |||||||||| | || |||||||||| | ||||    
T  50425970 gtgatcataccttgtacacttatgtcactgacatccttcatactagagatgatttacacggaaatgaaaatacaacatttgtgcatatttttaaggaaca 50426069  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactg 190  Q
    |||||||| |||| |||||||||| |||||||||||||||||||  |||| |||||||||    
T  50426070 aaatatgtatgcatattttatggccaaggaaggatcacatgcaatgtgctttgctcactg 50426129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 53590091 - 53589979
Alignment:
Q  87 catgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctc 186  Q
    |||| ||||| |||||||||| |||| ||| |||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||  |||||| |||    
T  53590091 catgtaaatgaaaatacaacattggtgcatgttttaagggaacaaaatatgtgtgcagattttatggctaaggagagatcacatgcaatgtgctcttctc 53589992  T
Q  187 actgaaattgtcc 199  Q
    |||||||||||||    
T  53589991 actgaaattgtcc 53589979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 10877654 - 10877778
Alignment:
Q  68 tcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatca 167  Q
    |||||||||||||  |||||||   |||| |||||||||| || | ||| |  ||||| |||| || |||||||||||||||||||||||||||| ||||    
T  10877654 tcatattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca 10877753  T
Q  168 catgcaagatgctctgctcactgaa 192  Q
    |||||||| ||||| ||||||||||    
T  10877754 catgcaaggtgctcggctcactgaa 10877778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 43445465 - 43445591
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    ||||||||||||||||||||||||||| |||  |||||||||||| ||||  |||||||  ||||  |||||||||  || | |   || ||||| ||||    
T  43445465 gtgatcataccttgcacacttatgctattgatatccttcatattatagatgatttacatagaaataaaaatacaacgttgatgcccgttcttagggaaca 43445564  T
Q  131 aaatatgtgtgcagattttatggctaa 157  Q
    |||||||||| ||||||||||||||||    
T  43445565 aaatatgtgttcagattttatggctaa 43445591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 51160857 - 51161021
Alignment:
Q  28 gttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaac---actggttcatatttttag 124  Q
    |||||||||||||  ||||||| ||| | |||||| ||||||||||||||||| ||||| ||| |||||  || || |    | || | ||| || ||||    
T  51160857 gttgtgatcatacagtgcacacatataccactgacatccttcatattagagatgttttatatggaaatgataacactaattaaatgttgcatgttcttag 51160956  T
Q  125 gaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcact 189  Q
     |||||||| ||||||||| |||||||||||||||| |||||| || |||| |||||||||||||    
T  51160957 aaaacaaaacatgtgtgcaaattttatggctaaggagggatcatattcaaggtgctctgctcact 51161021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 2443310 - 2443485
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgt-----ccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttagg 125  Q
    ||||||||||||||||||| |||||||||||| |     |||||||||||||||| |||||||||||||||| ||||||||| |  | ||| ||  ||||    
T  2443310 gtgatcataccttgcacacatatgctactgacatgacatccttcatattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagg 2443409  T
Q  126 aaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaattgtcctc 201  Q
     |||||||||||| || | |||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||    
T  2443410 gaacaaaatatgtatgtatattttatggctaaggaaggatcacgtgcaatgtgctctgctcactggaattgtcctc 2443485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 29047244 - 29047389
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||||  |||||||| |||||| |||| |||| | || ||| || ||||| ||||    
T  29047244 gtgatcataccttgcacatttatgctactaacatccttcatattagagatgctttacatggaaatggtaataaaacattagtacat-ttcttagggaaca 29047342  T
Q  131 aaatatgtgtgcagattttatggctaaggaaggatcacatgcaagat 177  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||    
T  29047343 aaatatgtgtgcagattttatggctatgtaaggatcacatgcaagat 29047389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 10993000 - 10992847
Alignment:
Q  26 tagttgtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttagg 125  Q
    |||| |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||      |||||||| ||||| |||| | | || |||||    
T  10993000 tagtcgtgatcataccttgcacacttatgctactgacatctttcatgttagagatgttttac------atggaaattcaacattggtgcttgttcttagg 10992907  T
Q  126 aaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctc 186  Q
     ||||||||||  || |  |||||||||||||| || ||||||||||||| || |||||||    
T  10992906 -aacaaaatataggtaccaattttatggctaagaaatgatcacatgcaaggtgttctgctc 10992847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 6863505 - 6863573
Alignment:
Q  121 ttaggaaacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgctcactgaaa 193  Q
    ||||| |||||||||||||||| |||||||| |||    |||||||||||||||| | |||||||||||||||    
T  6863505 ttagggaacaaaatatgtgtgcggattttattgct----aaggatcacatgcaaggtactctgctcactgaaa 6863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 17915123 - 17915164
Alignment:
Q  218 atggaatgtctcatcttgagagataagcttggaatttaattt 259  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  17915123 atggaatctctcatcttgagagataagcttggaacttaattt 17915164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 3036805 - 3036763
Alignment:
Q  217 tatggaatgtctcatcttgagagataagcttggaatttaattt 259  Q
    |||||||| ||||||| |||||||||||||||||| |||||||    
T  3036805 tatggaatctctcatcctgagagataagcttggaacttaattt 3036763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 32203511 - 32203573
Alignment:
Q  34 atcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatg 96  Q
    ||||||| |||||||||||||||| |||| |||||||| ||| |||  ||||||||| |||||    
T  32203511 atcatactttgcacacttatgctagtgacatccttcattttatagaaattttacatggaaatg 32203573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 38697500 - 38697442
Alignment:
Q  127 aacaaaatatgtgtgcagattttatggctaaggaaggatcacatgcaagatgctctgct 185  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  38697500 aacaaaatatgtctgcagattttatagctaaggaaggatcacatgcaagatgctctgct 38697442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 12291918 - 12291789
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaaca 130  Q
    |||||||| | ||||||||||||||||  ||  ||||||||||||||||| |||||||||||||||| ||| | ||| ||||  || || ||||  ||||    
T  12291918 gtgatcatgcattgcacacttatgctagcgagatccttcatattagagatgttttacatgaaaatggcaatgctacattggtgtatgttcttagagaaca 12291819  T
Q  131 aaatatgtgtgcagattttatggctaagga 160  Q
    |||||||||||||| |||||| | ||||||    
T  12291818 aaatatgtgtgcaggttttatagttaagga 12291789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 1362547 - 1362608
Alignment:
Q  127 aacaaaatatgtgtgcagattttatggctaaggaaggatc--acatgcaagatgctctgctc 186  Q
    |||||||||||| || ||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  1362547 aacaaaatatgtatgtagattttatggctaaggaaagatcagacatgcaaggtgctctgctc 1362608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 12292067 - 12292013
Alignment:
Q  31 gtgatcataccttgcacacttatgctactgacgtccttcatattagagatctttt 85  Q
    |||||||| | |||||||||||||||| |||  ||||||||||||||||| ||||    
T  12292067 gtgatcatgcattgcacacttatgctagtgagatccttcatattagagatgtttt 12292013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 38697523 - 38697584
Alignment:
Q  70 atattagagatcttttacatgaaaatggaaatacaacactggttcatatttttaggaaacaa 131  Q
    |||||||||||   |||||||||||||||||||||||  |||||||| || ||||| |||||    
T  38697523 atattagagatgcattacatgaaaatggaaatacaacggtggttcatgttcttagggaacaa 38697584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University