View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11878_high_2 (Length: 572)

Name: NF11878_high_2
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11878_high_2
NF11878_high_2
[»] chr4 (22 HSPs)
chr4 (217-436)||(39146729-39146949)
chr4 (19-203)||(26429188-26429372)
chr4 (15-203)||(48446601-48446789)
chr4 (27-203)||(26006081-26006257)
chr4 (19-203)||(35853118-35853302)
chr4 (28-203)||(2536975-2537150)
chr4 (28-201)||(33846276-33846449)
chr4 (28-203)||(52759123-52759298)
chr4 (19-203)||(25058300-25058484)
chr4 (28-203)||(8169321-8169495)
chr4 (28-203)||(17423818-17423993)
chr4 (28-203)||(12274148-12274323)
chr4 (27-201)||(22359239-22359412)
chr4 (26-200)||(9034864-9035025)
chr4 (34-195)||(54552579-54552740)
chr4 (28-200)||(19396165-19396337)
chr4 (19-203)||(791904-792066)
chr4 (490-556)||(39146528-39146594)
chr4 (424-473)||(39146588-39146637)
chr4 (33-195)||(6839751-6839913)
chr4 (70-180)||(23860011-23860121)
chr4 (34-137)||(652872-652975)
[»] chr7 (23 HSPs)
chr7 (19-195)||(25611367-25611543)
chr7 (19-203)||(14160423-14160607)
chr7 (19-203)||(23362248-23362432)
chr7 (26-201)||(3962292-3962467)
chr7 (27-203)||(9360709-9360885)
chr7 (19-203)||(4595026-4595210)
chr7 (28-203)||(8150851-8151026)
chr7 (19-203)||(30466627-30466813)
chr7 (29-201)||(9026533-9026702)
chr7 (28-203)||(42851933-42852111)
chr7 (19-168)||(28423910-28424059)
chr7 (28-203)||(40187326-40187502)
chr7 (51-203)||(5866208-5866360)
chr7 (85-203)||(6596171-6596289)
chr7 (34-203)||(2405146-2405314)
chr7 (28-137)||(24267784-24267893)
chr7 (55-201)||(35827562-35827708)
chr7 (26-203)||(21946920-21947084)
chr7 (28-125)||(33336091-33336188)
chr7 (125-203)||(12152749-12152828)
chr7 (57-187)||(49079074-49079204)
chr7 (42-98)||(12152671-12152727)
chr7 (171-203)||(19290392-19290424)
[»] chr6 (11 HSPs)
chr6 (19-203)||(32957397-32957581)
chr6 (27-203)||(7435612-7435788)
chr6 (19-203)||(7597519-7597703)
chr6 (53-203)||(7608471-7608621)
chr6 (56-198)||(6192539-6192681)
chr6 (28-203)||(13406086-13406261)
chr6 (86-197)||(34183123-34183234)
chr6 (14-201)||(31797974-31798161)
chr6 (27-203)||(12523578-12523733)
chr6 (121-195)||(29025240-29025314)
chr6 (34-97)||(32814068-32814131)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-203)||(187085-187269)
[»] chr8 (10 HSPs)
chr8 (19-203)||(25663464-25663648)
chr8 (19-203)||(5839724-5839908)
chr8 (38-201)||(11503067-11503230)
chr8 (51-201)||(32282841-32282991)
chr8 (19-203)||(32577996-32578194)
chr8 (40-203)||(36531116-36531279)
chr8 (19-203)||(14219792-14219976)
chr8 (51-191)||(10342353-10342497)
chr8 (63-201)||(40395242-40395378)
chr8 (142-187)||(31037712-31037757)
[»] chr5 (11 HSPs)
chr5 (19-203)||(9609498-9609682)
chr5 (19-203)||(30796794-30796978)
chr5 (19-203)||(29242104-29242288)
chr5 (27-197)||(1721938-1722108)
chr5 (58-203)||(39860924-39861069)
chr5 (83-203)||(36978727-36978850)
chr5 (28-203)||(4052831-4052985)
chr5 (144-203)||(16007128-16007187)
chr5 (27-83)||(27452586-27452642)
chr5 (165-203)||(40109288-40109326)
chr5 (167-203)||(27452479-27452515)
[»] chr3 (16 HSPs)
chr3 (19-203)||(55218642-55218826)
chr3 (19-203)||(51191868-51192052)
chr3 (28-203)||(43018351-43018526)
chr3 (19-203)||(8457856-8458040)
chr3 (27-203)||(51951903-51952079)
chr3 (30-203)||(39383422-39383595)
chr3 (19-179)||(39133617-39133777)
chr3 (19-203)||(13444077-13444262)
chr3 (28-199)||(21689707-21689876)
chr3 (15-203)||(26400131-26400319)
chr3 (81-191)||(7622657-7622766)
chr3 (31-96)||(42515701-42515766)
chr3 (489-556)||(9693726-9693792)
chr3 (170-203)||(39135493-39135526)
chr3 (147-187)||(19396844-19396884)
chr3 (28-92)||(23488025-23488089)
[»] chr2 (18 HSPs)
chr2 (27-203)||(45085981-45086157)
chr2 (28-203)||(24477472-24477647)
chr2 (28-190)||(10213786-10213948)
chr2 (19-203)||(23769771-23769955)
chr2 (26-203)||(22605884-22606061)
chr2 (27-203)||(38451689-38451864)
chr2 (28-203)||(23407745-23407920)
chr2 (90-203)||(11616661-11616774)
chr2 (31-203)||(1604827-1604998)
chr2 (81-202)||(31411362-31411483)
chr2 (26-163)||(40074066-40074201)
chr2 (19-200)||(27177683-27177864)
chr2 (76-203)||(32025536-32025662)
chr2 (433-555)||(10480957-10481079)
chr2 (158-203)||(20214301-20214346)
chr2 (107-191)||(28317799-28317883)
chr2 (34-97)||(18731665-18731728)
chr2 (167-203)||(1605079-1605115)
[»] scaffold0577 (1 HSPs)
scaffold0577 (19-203)||(2195-2379)
[»] scaffold0279 (1 HSPs)
scaffold0279 (30-203)||(6683-6856)
[»] chr1 (10 HSPs)
chr1 (58-203)||(48522162-48522307)
chr1 (28-203)||(25070822-25070976)
chr1 (28-203)||(19956504-19956676)
chr1 (67-203)||(26347349-26347485)
chr1 (19-187)||(11079900-11080068)
chr1 (19-154)||(25698549-25698684)
chr1 (134-198)||(15393504-15393568)
chr1 (53-137)||(31592302-31592386)
chr1 (45-90)||(15327478-15327523)
chr1 (20-60)||(48519021-48519061)
[»] scaffold0450 (1 HSPs)
scaffold0450 (27-200)||(5258-5431)
[»] scaffold0200 (1 HSPs)
scaffold0200 (27-203)||(26934-27110)
[»] scaffold0011 (1 HSPs)
scaffold0011 (30-203)||(58370-58543)
[»] scaffold0004 (1 HSPs)
scaffold0004 (28-174)||(216430-216576)
[»] scaffold0360 (1 HSPs)
scaffold0360 (112-195)||(5316-5399)
[»] scaffold0201 (2 HSPs)
scaffold0201 (125-203)||(20695-20773)
scaffold0201 (28-89)||(20625-20686)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 217 - 436
Target Start/End: Complemental strand, 39146949 - 39146729
Alignment:
Q  217 ccagtcgaatggtggtgtcgttatatgttttcactgtgttcacaaaattgggtacttaaaatggccatttaagccag-gccgaatggttggtagtaccgt 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||||||    
T  39146949 ccagtcgaatggtggtgtcgttatatgttttcactatgttcacaaaattgggtacttaaaatggccatttaaacaaaagccgaatggttggtagtaccgt 39146850  T
Q  316 tatatgctttcaccctgttcataaaattggataccaaaaacggttatatgctttcaccttgtttacaaaattgaataaaccctaaaggcatacccttaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39146849 tatatgctttcaccctgttcataaaattggataccaaaaacggttatatgctttcaccttgtttacaaaattgaatacaccctaaaggcatacccttaaa 39146750  T
Q  416 atccacttctagtctagtcta 436  Q
    |||||||||||||||||||||    
T  39146749 atccacttctagtctagtcta 39146729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 26429372 - 26429188
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26429372 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacaaagtcgctcatagctttgctagagtggctttgcg 26429273  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  26429272 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 26429188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 48446601 - 48446789
Alignment:
Q  15 gacggtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctt 114  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  48446601 gacggtagacgtctgttagcttcagatttagtaacctctgatgttaggtttattcggagacaagccaacgaagttgctcatagctttgctagagtgactt 48446700  T
Q  115 tgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  48446701 tgcgtcatgctagtttccatattcatattatggttccatcttatatctctactattattatgaatgaaatacaataaatttcttcttgt 48446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 26006257 - 26006081
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26006257 ctgttagcttctgatgtagtaacttctgatgttaggtttattcagagacaagccaacgaagtcgctcatagttttgcttgagtggctttgcgtcatgcta 26006158  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  26006157 gtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 26006081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 35853118 - 35853302
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35853118 gtagacttctgttagcttctgatttaataacctctgatgttaggttcattcggagacaagtcaacgaagtcgctcatagttttgctagagtggctttgcg 35853217  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||    
T  35853218 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaattaaatgcaataagtttcttcttgt 35853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 2537150 - 2536975
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||    
T  2537150 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtctcttataactttgctagagtgactttgcgtcatgctag 2537051  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| ||| ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||    
T  2537050 tttccatattcatgttaggattccatcttgtatctctactattattatgaataaaatgcaataagtttcttcttgt 2536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 33846276 - 33846449
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33846276 tgttagcttctgatttggtaacctctggtgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 33846375  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    ||||||||||||  ||| ||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||    
T  33846376 tttccatattcacattaggattccatcttgtatttctactattattctgaatgaaatgcaataagtttcttctt 33846449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 52759298 - 52759123
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  52759298 tgttagcttatgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgctcatagttttgttagagtggctttgtgtcatgctag 52759199  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| ||| ||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||    
T  52759198 tttccatattcatattatgattccatcgtgtatctatactattattatgaatgaaatgcaataagtttcttcttgt 52759123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 25058484 - 25058300
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |||||| |||    
T  25058484 gtagacgtctgttagcttctgatttagtaacatctgatgttaggtttatttggagacaagccaacgaagtcgctcatagttttgttagactggcttcgcg 25058385  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||| |||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||| ||||  | |||||||||||||||    
T  25058384 tcatgttagtttccatattcatattaagattcaatcttgtatctctactattattatgaataaaatatagtaagtttcttcttgt 25058300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 8169495 - 8169321
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  8169495 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctaggatggcttcgcgtcatgctag 8169396  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||  ||||||| |||  |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8169395 tttcattattcatattagaattccaccttatatctctactattattatgaatg-aatgcaataagtttcttcttgt 8169321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 17423993 - 17423818
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||    
T  17423993 tgttagcttctgatttggcaacctatgatgttaggtttattcggagacaagccaacgaagttgctcatagctttgctagagtggcttcgagtcatgctag 17423894  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||    
T  17423893 tttccatattcatattaggattccatcttgtatctctactattatcatgaatgaaattcaataagtttcttcttgt 17423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 12274148 - 12274323
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  ||||| |||||| |||    
T  12274148 tgttagcttctgatttagtaacctctgatgttaggtttattcggagataagccaacgaagtcgctcttagctttgctagagtaactttgtgtcatgttag 12274247  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| ||||| || ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  12274248 tttctatatttatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagttttttcttgt 12274323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 22359412 - 22359239
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    ||||||||||||||||||||||  ||||||||| | |||||||| | |||||||||||||||| ||||||| ||||||  |||||||||| |||||||||    
T  22359412 ctgttagcttctgatttagtaatctctgatgtttg-tttattcgaatacaagccaacgaagtcactcatagttttgctttagtggctttgtgtcatgcta 22359314  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  22359313 gtttccatattcatattaagattccatcttgtatctctactattattatgaatgaaatgcaataagtttgttctt 22359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 9034864 - 9035025
Alignment:
Q  26 tctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 125  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||             ||||||||||||||||||    
T  9034864 tctgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcggtca-------------gtggctttgcgtcatgct 9034950  T
Q  126 agtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 200  Q
    ||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  9034951 agtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttct 9035025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 54552579 - 54552740
Alignment:
Q  34 cttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttcca 133  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  54552579 cttctgatttagtaacctctgatgttaggtttattcggatacaagctaacgaagtcggtcatagctttgctagagtggctttgcgtcatgctagatttca 54552678  T
Q  134 tattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 195  Q
    ||||||| | | |||||| |||| |||||   ||||||||||||||||||||||||||||||    
T  54552679 tattcatatcaggattccttcttgtatctttgctattattatgaatgaaatgcaataagttt 54552740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 19396337 - 19396165
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||| |||| |||||||  ||||||||||||||| ||||    
T  19396337 tgttagcttctgatttagtaacctttgatgttaggtttattcggagacaagccaataaagtcgcttatagttttgctatggtggctttgcgtcatactag 19396238  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 200  Q
    ||| || |||||| ||||||||  ||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  19396237 ttttcacattcatattaagattgtatcttgtatctctactattattatgaatgaaatgcaataagttttttct 19396165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 791904 - 792066
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||                   
T  791904 gtagacgtctgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaacgaagttgctcatagttttgc--------------- 791988  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
          |||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||    
T  791989 ------tagtttccatattcatattaggattccatcttatatctctac-attattatgaatgaaatgcaataaatttcttcttgt 792066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 39146594 - 39146528
Alignment:
Q  490 tttcaattcacacacccgttcaaaatcttaagattcgatgtttactcttcaatttcccaccaattcc 556  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  39146594 tttcaattcacaaatccgttcaaaatcttaagatttgatgtttactcttcaatttcacaccaattcc 39146528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 473
Target Start/End: Complemental strand, 39146637 - 39146588
Alignment:
Q  424 ctagtctagtctagtatataaacactaatagttggtgctaatttttcaat 473  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  39146637 ctagtctagtctagtatataaacaccaatagttggtgctaatatttcaat 39146588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 6839913 - 6839751
Alignment:
Q  33 gcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttcc 132  Q
    |||||||||||||| |  |||||||| | ||| ||| | |||||| |||| ||| | |||||||| || | ||| || |||    |||||||||||||||    
T  6839913 gcttctgatttagtgaactctgatgtaaagttcattagaagacaatccaatgaaattgctcatagtttagatagggtagctccatgtcatgctagtttcc 6839814  T
Q  133 atattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 195  Q
    | |||  | |||  |||||||||| |||||| || |||||||||||| ||||||| |||||||    
T  6839813 acatttttattagaattccatcttttatctctacgattattatgaataaaatgcactaagttt 6839751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 23860121 - 23860011
Alignment:
Q  70 ggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactat 169  Q
    ||||| ||| ||||||| |||||||||||||| ||||||||  ||||| ||||  || ||| ||||||||| ||| |||| |||||  |||||| ||||     
T  23860121 ggagataagtcaacgaaatcgctcatagctttactagagtgattttgcatcataataattttcatattcatattacgatttcatctcgtatctctactac 23860022  T
Q  170 tattatgaatg 180  Q
    ||| |||||||    
T  23860021 tataatgaatg 23860011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 652872 - 652975
Alignment:
Q  34 cttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttcca 133  Q
    ||||| |||||| ||| |||||||||||||||| ||| | |||| |||| ||||| |||||||| || ||||| ||  |||   |||||||| |||||||    
T  652872 cttctaatttagaaacctctgatgttaggtttagtcgaatacaatccaatgaagttgctcatagtttagctagggtaacttaatgtcatgcttgtttcca 652971  T
Q  134 tatt 137  Q
    ||||    
T  652972 tatt 652975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 5e-76; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 25611543 - 25611367
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25611543 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 25611444  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 195  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  25611443 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagttt 25611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 14160423 - 14160607
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14160423 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 14160522  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||| | ||||||| ||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  14160523 tcatgctagtttgcgtattcatattaggattccttcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 14160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 23362248 - 23362432
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23362248 gtagacgtctgttagcttctgatttagtaacctctgatgtaaggttcattcggagacaagccaacaaagtcgctcatagctttgctagagtggctttgcg 23362347  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||    
T  23362348 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataaatttcttcttgt 23362432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 3962467 - 3962292
Alignment:
Q  26 tctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 125  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3962467 tctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagttgctcatagctttgctagagtggctttgcgtcatgct 3962368  T
Q  126 agtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    ||||||||||||| | ||| ||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||    
T  3962367 agtttccatattcgtattaggattccatcttgtatctctactattattttgaatgaaatgcaataagcttcttctt 3962292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 9360709 - 9360885
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  9360709 ctgttagcttctgttttagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgatcatagttttgctagagtagttttgcgtcatgcta 9360808  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  9360809 gtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatacaataagtttcttcttgt 9360885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 4595210 - 4595026
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||  |    
T  4595210 gtagacgtctgttagcttctgatttagtaacctctgatgttaggtttgttcggagacaaaccaacgaagtcgctcatagttttgctagagtggttttctg 4595111  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| |||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  4595110 tcatgctagtttccatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataagtttattcttgt 4595026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 8151026 - 8150851
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  8151026 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagcaaacgaagtcgctcatagttttgctagcgtgactttgcgtcatactag 8150927  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||| |||||| ||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  8150926 tttccaaattcatattaggattccatcttgtatctctactattattatgaatgaaatgtaataagtttcttcttgt 8150851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 30466627 - 30466813
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30466627 gtagacgtctgttagcttctgatatagtaacctctgaagttaggttcattcggagacaagccaacgaagtcgctcatagttttgctagagtggctttgcg 30466726  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactatta--ttatgaatgaaatgcaataagtttcttcttgt 203  Q
    | |||||||||||||||||||| ||| ||||||||||| |||||| |||||||  || |||||||||||||||||||||||| ||||    
T  30466727 ttatgctagtttccatattcatattaggattccatcttgtatctctactattattttttgaatgaaatgcaataagtttctttttgt 30466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 9026533 - 9026702
Alignment:
Q  29 gttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagt 128  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  9026533 gttagcttctgatttagtaacttatgatgttaggtttattcagagacaagtcaacgaagtcgctcatagttttgctagagtggatttgcgtcatgctaat 9026632  T
Q  129 ttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    |||||||||||| ||||||||||||||| |||||   |||||||||||||||||||| |||||||||||||||    
T  9026633 ttccatattcatattaagattccatcttgtatct---ctattattatgaatgaaatgaaataagtttcttctt 9026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 42851933 - 42852111
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||||||||||| |||    
T  42851933 tgttagcttctgacttagtaacctctgatgttaggtttattcggagacaatccaacgaagtcgctcatagttttgctaacgtggctttgcgtcatgttag 42852032  T
Q  128 tttccatattcattttaagattccatcttatatctc---aactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| ||| ||||||||||||||||||    | ||||||||||||||||||| |||||||||||||||||    
T  42852033 tttccatattcatattaggattccatcttatatctctattattattattatgaatgaaatggaataagtttcttcttgt 42852111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 28424059 - 28423910
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  28424059 gtagacttctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgca 28423960  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaacta 168  Q
    |||||||||||||||||||||| | |  |||||||||| |||||||||||    
T  28423959 tcatgctagtttccatattcatatcagaattccatcttgtatctcaacta 28423910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 40187326 - 40187502
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagcttt-gctagagtggctttgcgtcatgcta 126  Q
    ||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||  | ||||||| ||| | |||||||| |||||||| |||||    
T  40187326 tgttaacttctgatttagtaacctttgatgttaggtttatttggagacaagccaacgaaaacactcatagtttttgttagagtggttttgcgtcttgcta 40187425  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| ||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  40187426 gttttcatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 40187502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 5866208 - 5866360
Alignment:
Q  51 tctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattc 150  Q
    ||||||||||||||||||||||||||||| ||| || | |||||||||||| |||||||||||| | |||||| || ||||||||||||| ||| ||||     
T  5866208 tctgatgttaggtttattcggagacaagcaaacaaaattgctcatagctttcctagagtggcttcgtgtcatgttaatttccatattcatattaggattt 5866307  T
Q  151 catcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  5866308 catcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgt 5866360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 6596171 - 6596289
Alignment:
Q  85 aagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaat 184  Q
    ||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||| || ||||||||| ||||||||||    
T  6596171 aagtcactcatagttttgttagagtggttttgcgtcatgctagtttccatattcatattaggattccatcttgtatatctactattattttgaatgaaat 6596270  T
Q  185 gcaataagtttcttcttgt 203  Q
    |||||||||||||||||||    
T  6596271 gcaataagtttcttcttgt 6596289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 2405146 - 2405314
Alignment:
Q  34 cttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttcca 133  Q
    |||||||||||||||| | |||||||||| ||||| ||||||| | ||||||||||  | || | || ||| |||||||| || ||||||||||||| |     
T  2405146 cttctgatttagtaacct-tgatgttagggttattaggagacatgtcaacgaagtcatttattgtttcgctcgagtggctctgtgtcatgctagttttcg 2405244  T
Q  134 tattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| || ||||||||||||||||||||||   ||||||||| |||||||| |||||||||| |||||||    
T  2405245 tatttatattaagattccatcttatatctctcatattattataaatgaaatacaataagttttttcttgt 2405314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 24267893 - 24267784
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||| ||||||||||||||| ||| ||||||||||||||| |||||||| ||| |||||||||||||| ||||||||  || |||||||||||| |||    
T  24267893 tgttagtttctgatttagtaacctctaatgttaggtttattcagagacaagtcaatgaagtcgctcatagttttgctaggatgactttgcgtcatgttag 24267794  T
Q  128 tttccatatt 137  Q
    ||||||||||    
T  24267793 tttccatatt 24267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 35827562 - 35827708
Alignment:
Q  55 atgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatc 154  Q
    ||||||||||||||| |||||||||| || |||| |||||||||||||||||| ||| ||   ||||||||| ||||||||||||| |||||||| ||||    
T  35827562 atgttaggtttattctgagacaagcctacaaagttgctcatagctttgctagaatggattcatgtcatgctaatttccatattcatattaagatttcatc 35827661  T
Q  155 ttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    || ||||||   |  |||||| ||| ||||||||||| |||||||||    
T  35827662 ttgtatctctctttatattataaataaaatgcaataaatttcttctt 35827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 21947084 - 21946920
Alignment:
Q  26 tctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 125  Q
    |||||||||||||||||||||||| ||| |      |||||||||||||||||||||| ||||||||||||| ||||||||  || |||||| ||||| |    
T  21947084 tctgttagcttctgatttagtaacctctaa------gtttattcggagacaagccaacaaagtcgctcatagttttgctaggatgactttgcatcatgtt 21946991  T
Q  126 agtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    || |||||||      |||||||  |||||| ||| || ||||||||||| ||||||||| |||||||||||||||||    
T  21946990 ag-ttccata------ttaagatctcatcttgtatatctactattattataaatgaaatggaataagtttcttcttgt 21946920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 33336188 - 33336091
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 125  Q
    |||||||||||||||||| ||| |||  | |||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||| ||||||||||    
T  33336188 tgttagcttctgatttagcaacctctagtattaggtttattcagagacaagccaacgaagttgctcataagtttgctagggtggcttcgcgtcatgct 33336091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 12152749 - 12152828
Alignment:
Q  125 tagtttccatattcat-tttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| || |||||||||||||| |||||||| ||||||||| | ||||||||||||||| |||| ||||||    
T  12152749 tagtttccatattgatatttaagattccatcgtatatctctactattattttaaatgaaatgcaataaatttcatcttgt 12152828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 49079074 - 49079204
Alignment:
Q  57 gttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatctt 156  Q
    |||||||||||| |||||||| ||||| |||||||| |||| || || ||| ||||| |  |||||| |||||| || |||||| |||| |||||||| |    
T  49079074 gttaggtttatttggagacaaaccaacaaagtcgcttatagattagcaagaatggctctttgtcatgttagttttcacattcatattaaaattccatcat 49079173  T
Q  157 atatctcaactattattatgaatgaaatgca 187  Q
     |||||| | | |||||||  ||||||||||    
T  49079174 gtatctctattcttattatagatgaaatgca 49079204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 12152671 - 12152727
Alignment:
Q  42 ttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagc 98  Q
    ||||||||||||| |||||||||||||||||| ||| | ||| ||||||||||||||    
T  12152671 ttagtaacatctgctgttaggtttattcggaggcaaacaaacaaagtcgctcatagc 12152727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 19290424 - 19290392
Alignment:
Q  171 attatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||||||||||| |||||||    
T  19290424 attatgaatgaaatgcaataagttttttcttgt 19290392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 32957397 - 32957581
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32957397 gtagacgtctattagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 32957496  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||    
T  32957497 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcgataagtttcttcttgt 32957581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 7435788 - 7435612
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  7435788 ctgttaacttctgatttagtaacctctgatgttaggtttattcggagacaagtcaacgaagtcgctaatagctttgctagagtggctttgcgtcatgcta 7435689  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||| ||| ||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||    
T  7435688 gtttccatattcatattaggattccatcttgtatctctactattattatgaacgaaatgcaataaatttcttcttgt 7435612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 7597519 - 7597703
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| | |||||| || | |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  7597519 gtagacgtatgttagttttttatttagtaacctctgatgttaggtttattcggagacaagccaccaaagtcgctcatagctttgctagagtggctttgcg 7597618  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    | |||||||||| ||||||||| ||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||    
T  7597619 tgatgctagttttcatattcatattaggattccatcttatatctctactcttattatgaatgaaaagcaataaatttcttcttgt 7597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 7608471 - 7608621
Alignment:
Q  53 tgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattcca 152  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||  ||||||    
T  7608471 tgatgttaggtttattcgaagacaagccaacgaagtcactcatagctttgctatagtggctttgcgtcatgctagtttccatattcatattataattcca 7608570  T
Q  153 tcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  7608571 tcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgt 7608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 6192539 - 6192681
Alignment:
Q  56 tgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatct 155  Q
    ||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||| | ||| |||||||||||||||||||| ||| ||||||||||    
T  6192539 tgttaggttcattcggagacaagccaacgaaatcactcatatctttgctagagtggctctacgttatgctagtttccatattcatattaggattccatct 6192638  T
Q  156 tatatctcaactattattatgaatgaaatgcaataagtttctt 198  Q
    | ||| || |||||||| |||||||||||||||||||||||||    
T  6192639 tgtatttctactattatcatgaatgaaatgcaataagtttctt 6192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 13406086 - 13406261
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||| ||||||| ||||||||  || ||| | ||||||||||    
T  13406086 tgttagcttctgatttagcaacctctgatgttatgtttattcggagacaagccaattaagtcactcatagttttgctaggatgacttcgagtcatgctag 13406185  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||| |||| ||||||||| ||| | |||||| ||| ||||| | |||||||| ||||||| ||||||||||    
T  13406186 tttccataatcatattaagattcgatcgtgtatctctactcttattttaaatgaaatacaataagcttcttcttgt 13406261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 34183234 - 34183123
Alignment:
Q  86 agtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatg 185  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||  |||| |||||| |||||| |||| |||||||||| |||||    
T  34183234 agtcgctcatagctttgctagagtggctttgcgtcatgttagttttcatatttatattgggatttcatcttgtatctctactactattatgaattaaatg 34183135  T
Q  186 caataagtttct 197  Q
    ||||||||||||    
T  34183134 caataagtttct 34183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 31798161 - 31797974
Alignment:
Q  14 agacggtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggct 113  Q
    |||| |||||||| ||||||||| |||| ||||||| |||||||||||||||||| | |||||||| ||||||||  ||||||  |||||||    ||||    
T  31798161 agactgtagacatatgttagcttttgatctagtaacctctgatgttaggtttatttgaagacaagctaacgaagttactcataaatttgctatgacggct 31798062  T
Q  114 ttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    |  | |||| ||||||| |||||  || ||| |||| |||||| ||||||  |||||||||||||| ||||||||||| ||| |||||    
T  31798061 tcacatcattctagttttcatatctatattaggatttcatcttgtatctctgctattattatgaataaaatgcaataaatttattctt 31797974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 12523578 - 12523733
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||||||||| |||||  || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||                     ||    
T  12523578 ctgttagcttctaatttaacaaaatctgatgttaggtttattcggagacaagccaacgaagttgctcatagttttgc---------------------ta 12523656  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||| ||| |||| |||||| |||||| || |||||||||||||||||||||||| |||||||||||    
T  12523657 gtttccatattcatattaggatttcatcttgtatctctaccattattatgaatgaaatgcaataaatttcttcttgt 12523733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 29025314 - 29025240
Alignment:
Q  121 atgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 195  Q
    ||||||| |||||||||| | |||||||| |||||| |||| | |||||||||||||||||||||||||||||||    
T  29025314 atgctaggttccatattcgtattaagatttcatcttgtatcactactattattatgaatgaaatgcaataagttt 29025240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 32814068 - 32814131
Alignment:
Q  34 cttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatag 97  Q
    ||||| |||||||||  |||||||||||||||||||| |||||||| ||  |||||||| ||||    
T  32814068 cttctaatttagtaatctctgatgttaggtttattcgaagacaagctaataaagtcgcttatag 32814131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 187085 - 187269
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  187085 gtagacgtctgttagcttctgatttagtaacctctaatgttaggttcattcggagacaagccaacgaattcgctcatagctttgctatagtggctttgcg 187184  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  187185 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 187269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 25663464 - 25663648
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25663464 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggatttgcg 25663563  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||| ||||||||||||| ||| ||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||    
T  25663564 tcatgctattttccatattcatattaggattccatcttgtatctctcctattattttgaatgaaatgcaataagtttcttcttgt 25663648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 5839724 - 5839908
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5839724 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcatttggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 5839823  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||||| || |||  ||| |||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  5839824 tcatgctagtttccatattaatattagaatttcatcttgtatctctactattatcatgaatgaaatgcaataagtttcttcttgt 5839908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 11503230 - 11503067
Alignment:
Q  38 tgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatatt 137  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11503230 tgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgcgtcatgctagtttccatatt 11503131  T
Q  138 cattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    ||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  11503130 catattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttcttctt 11503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 32282991 - 32282841
Alignment:
Q  51 tctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattc 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||    
T  32282991 tctgatgttaggtttattcggagacaaaccaacgaagtcgctcatagctttgctagagtgactttgcatcatgctagtttccatattcatattaggattc 32282892  T
Q  151 catcttatatctcaactattattatgaatgaaatgcaataagtttcttctt 201  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  32282891 catcttgtatctctactattattatgaatgaaatgcaataagtttcttctt 32282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 32577996 - 32578194
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagag---------- 108  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||              
T  32577996 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagttgctcatagctttgctagagtggctttgct 32578095  T
Q  109 ----tggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
        |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||    
T  32578096 agaatggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttattcttgt 32578194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 36531116 - 36531279
Alignment:
Q  40 atttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattca 139  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| | | |||| ||||||||| ||||||||||||    
T  36531116 atttagaaacctctgatgttaggtttattcggagacaagcaaacgaagtcgcttatagttttgctagaatagttttgtgtcatgctaatttccatattca 36531215  T
Q  140 ttttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    | ||| ||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||    
T  36531216 tattaggattccatcttgtttctctactattattatgaatgaaatgcaataaatctcttcttgt 36531279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 14219976 - 14219792
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||| |||||| |||||  || || |||||| ||  | |    
T  14219976 gtagacgtctgttagcttttgatttagtaatatctgatgttaggtttattaggagacaaaccaacaaagtcggtcataatttcgccagagtgactccgtg 14219877  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||| |||||||||||||||| |||||||| || |||| || || ||||||||| | |||||||| |||||| |||||||||||    
T  14219876 tcatgttagtttccatattcatattaagatttcagcttacatttctactattattttaaatgaaatacaataaatttcttcttgt 14219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 10342353 - 10342497
Alignment:
Q  51 tctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattca---ttttaaga 147  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||||||||| | |||||||| ||||||||||||| ||||||||   | ||| ||    
T  10342353 tctgatgttaggtttatttggagacaaaccaacgaaatcgctcatagctttgctaaaatggctttgtgtcatgctagttttcatattcatattattagga 10342452  T
Q  148 ttccatcttatatctcaactattatt-atgaatgaaatgcaataa 191  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  10342453 ttccatcttatatctctactattattaatgaatgaaatacaataa 10342497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 40395242 - 40395378
Alignment:
Q  63 tttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatct 162  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||| || |||||||| |||||||||||||||| |||  |||  ||||| |||||    
T  40395242 tttattcggagacaagtcaactaagtcactcatagctttgctagagtggattcgcgtcatgttagtttccatattcatattagaattttatcttgtatct 40395341  T
Q  163 caactattattatgaatgaaatgcaataagtttcttctt 201  Q
    | ||||||||  |||||||||| |||||| |||||||||    
T  40395342 ctactattat--tgaatgaaatacaataaatttcttctt 40395378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 31037757 - 31037712
Alignment:
Q  142 ttaagattccatcttatatctcaactattattatgaatgaaatgca 187  Q
    |||| |||||||||| |||||| ||||||||| |||||||||||||    
T  31037757 ttaaaattccatcttgtatctctactattattttgaatgaaatgca 31037712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 9609682 - 9609498
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  9609682 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgca 9609583  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||    
T  9609582 tcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgtatgaaatgcaataagtttcttcttgt 9609498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 30796978 - 30796794
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30796978 gtagacgtctattagcttatgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 30796879  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    || ||||||||||||||||||| ||| |||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||    
T  30796878 tcttgctagtttccatattcatattaggattccatcttgcatctctactattattttgaatgaaatgcaataagtttcttcttgt 30796794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 29242288 - 29242104
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  29242288 gtagacgtctgttagcttctgacttagtaacctctgatgttaggttcattcggagacaagccaatgaagtcgctcatagctttgctagagtggctttaca 29242189  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||||| || ||| |||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||    
T  29242188 tcatgctagtttccatatttatattaggattccatattgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 29242104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 1721938 - 1722108
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  1721938 ctgttaacttatgatttagtaacctctgatgttaggtttatttggagacaagccaacgaagtcgctcatagtttggctagagtggcttcgcgtcatgcta 1722037  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttct 197  Q
    |||||||||||||| |||| ||| |||||| |||||| | |||||||||||| ||||||||||||||||||    
T  1722038 gtttccatattcatattaaaatttcatcttgtatctctattattattatgaaagaaatgcaataagtttct 1722108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 39860924 - 39861069
Alignment:
Q  58 ttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatctta 157  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||| ||| ||||| |||||     
T  39860924 ttaggtttattcggagacaagccaaggaagtcgctcataattttgctagggtggcttcgcgtcatgctagtttccatattcatattatgattcaatcttg 39861023  T
Q  158 tatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||| |||||||||||||| |||||||||||||||| |||||||    
T  39861024 tatctctactattattatgaaagaaatgcaataagttttttcttgt 39861069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 36978727 - 36978850
Alignment:
Q  83 cgaagtcgctcatagctttgctag---agtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaat 179  Q
    |||||||||||||||||||| ||    ||||| || ||||||||||||||| |||||| || ||| ||||||||||| |||||| |||||||||||||||    
T  36978727 cgaagtcgctcatagctttgttaattaagtggtttcgcgtcatgctagttttcatatttatattaggattccatcttgtatctctactattattatgaat 36978826  T
Q  180 gaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||||||||||    
T  36978827 gaaatgcaataagtttcttcttgt 36978850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 4052831 - 4052985
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||                     |||    
T  4052831 tgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaacgaagttgctcatagttttgc---------------------tag 4052909  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||    
T  4052910 tttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgt 4052985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 16007187 - 16007128
Alignment:
Q  144 aagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16007187 aagatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 16007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 27452642 - 27452586
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaac 83  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  27452642 ctgttagcttatgatttagtaacctctgatgttaggtttattcggagataagccaac 27452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 40109288 - 40109326
Alignment:
Q  165 actattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  40109288 actattattatgaatgaaatgcaataaatttcttcttgt 40109326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 27452515 - 27452479
Alignment:
Q  167 tattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||||||||||| |||||||||||    
T  27452515 tattattatgaatgaaatgcaataaatttcttcttgt 27452479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 55218826 - 55218642
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55218826 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 55218727  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||||||||| || ||| |||||||| || |||||||||||||||||||||| ||||    
T  55218726 tcatgctagtttccatattcatattaggattccatcttgtacctctactattatcataaatgaaatgcaataagtttctttttgt 55218642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 51192052 - 51191868
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||    
T  51192052 gtagacgtctgttagcttatgatttagtaacctctgatgttaggtttattcagagacaagccaacgaagtcgttcatagctttgctagattgactttgcg 51191953  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| |||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  51191952 tcatgctagtttccatattcatattatgatttcatcttgtatctgtactattattatgaatgaaatgcaataagtttcttcttgt 51191868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 43018526 - 43018351
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||| |||||||||||||||    
T  43018526 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaacaaagttgctcatagttttgctatagtggttttgcgtcatgctag 43018427  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  43018426 tttccatattcatattatgattccatcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgt 43018351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 8457856 - 8458040
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| | ||||||||||    
T  8457856 gtagacacctgttagcttttgatttagtaacctctgatgttaggtttattcgaagacaagccaatgaagtcgcttatagctttgctataatggctttgcg 8457955  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||| ||||||||| ||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  8457956 tcatgctagttttcatattcatattaggatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 8458040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 51951903 - 51952079
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  51951903 ctgttagcttctgatttagtaacctctgatgttaggtttattcgaagacaagccaatgaattcgctcatagttttgctagagtggctttacgtcatgcta 51952002  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| ||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  51952003 gttttcatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttctttttgt 51952079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 39383422 - 39383595
Alignment:
Q  30 ttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtt 129  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| || ||    
T  39383422 ttagcttctaatttaataacctctgatgttaggtttattcggagacaagtcaacgaagtcgttcatagctttgctcgagtggttttgcgtcatgttaatt 39383521  T
Q  130 tccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||| ||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  39383522 tccatattcatattatgattccattttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 39383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 39133617 - 39133777
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39133617 gtagacgtttgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagctttgctagagtgactttgcg 39133716  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaat 179  Q
    |||||||||||||||||||||| ||| ||||| ||||| |||||| ||||||||| |||||    
T  39133717 tcatgctagtttccatattcatattaggattcaatcttgtatctctactattattttgaat 39133777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 13444077 - 13444262
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||||||| || |  ||||||  ||    
T  13444077 gtagacgtctgttagcttctgatttagcaaccactgatgttaggtttattcggagacaagtcaacgaagtcgctcatagctttcctcggttggcttcacg 13444176  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatct-caactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| ||||||||||||||||| ||| ||||||||||| ||||| | ||||| |||||||||||||| ||||||||||||||||||    
T  13444177 tcattctagtttccatattcatattaggattccatcttttatctcctactatcattatgaatgaaatacaataagtttcttcttgt 13444262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 21689707 - 21689876
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    ||||||||||| || ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||  ||||||||||||||||||||||||||| |||    
T  21689707 tgttagcttctaatctagtaacctctgatgttaggtttattcagagacaagtcaacgaagtcactca--gctttgctagagtggctttgcgtcatgttag 21689804  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttc 199  Q
    ||||||||||||| ||| |||| |||||| |||||| |||||||||||||||||||| ||||||||| ||||    
T  21689805 tttccatattcatattatgatttcatcttgtatctctactattattatgaatgaaatacaataagttacttc 21689876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 26400131 - 26400319
Alignment:
Q  15 gacggtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctt 114  Q
    ||||||||||| || ||| |||  ||||||| ||| |||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||    | ||    
T  26400131 gacggtagacacctcttacctttagatttagaaacctctgatgttaggtttattcatagacaagccaacaaagtcgctcatagttttgctaggaaagttt 26400230  T
Q  115 tgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
     ||||||||||||||||||||||||| ||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  26400231 cgcgtcatgctagtttccatattcatattatgattccatattgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 26400319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 7622657 - 7622766
Alignment:
Q  81 aacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatg 180  Q
    |||||| ||||| |||| |||||||  ||||||| |||| |||||||||| ||||||||| ||| |||| |||||| |||||| ||||||||||| ||||    
T  7622657 aacgaaatcgcttatagatttgctaaggtggcttcgcgt-atgctagttttcatattcatattaggatttcatcttgtatctctactattattataaatg 7622755  T
Q  181 aaatgcaataa 191  Q
    |||||||||||    
T  7622756 aaatgcaataa 7622766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 42515766 - 42515701
Alignment:
Q  31 tagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcata 96  Q
    |||||||||||||||||   ||||||||||| ||||||  |||||||||||||| |||||| ||||    
T  42515766 tagcttctgatttagtagtctctgatgttagatttatttagagacaagccaacgtagtcgcccata 42515701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 9693726 - 9693792
Alignment:
Q  489 ttttcaattcacacacccgttcaaaatcttaagattcgatgtttactcttcaatttcccaccaattcc 556  Q
    ||||||||||||||||  ||||||||||| |||| | | ||||||||||||||||||| || ||||||    
T  9693726 ttttcaattcacacactagttcaaaatctaaagacttg-tgtttactcttcaatttcctactaattcc 9693792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 39135493 - 39135526
Alignment:
Q  170 tattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| |||||||||||||||||||||||||||||    
T  39135493 tattttgaatgaaatgcaataagtttcttcttgt 39135526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 19396844 - 19396884
Alignment:
Q  147 attccatcttatatctcaactattattatgaatgaaatgca 187  Q
    |||||||||| ||||||||| ||||||||||||| ||||||    
T  19396844 attccatcttgtatctcaacaattattatgaatgtaatgca 19396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 23488025 - 23488089
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgct 92  Q
    ||||||||| |||||||| ||    |||||||||||||| || |||||||||| |||||||||||    
T  23488025 tgttagcttgtgatttagcaattgatgatgttaggtttaatcagagacaagcctacgaagtcgct 23488089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 45086157 - 45085981
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||    
T  45086157 ctgttagcttatgatttagtaacctctgatgttaggtttattcggagacaagccaacaaagtcgctcatagcttggctagagtggcttcgcgtcatgcta 45086058  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  45086057 gtttccatattcatattaggattccatcttatatctctactattattatgaatgaaatgaaataagtttcttcttgt 45085981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 24477647 - 24477472
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  24477647 tgttagcttctgatttagtaacctctgatgttaggtttattcggagataaaccaacgaagtcgctcatagttttgctagagtggctttgcgttatgctag 24477548  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||| ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  24477547 ttttcatattcatattaggattccatcttatatctctactattatgatgaatgaaatgcaataagtttcttcttgt 24477472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 10213786 - 10213948
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  10213786 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaaaccaacgaagtcgctcatagttttgctagggtggcttcgcgtcatgctag 10213885  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaata 190  Q
    ||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  10213886 tttccatattcatattaagatttcatcttgtatctctactattattatgaatgaaatgcaata 10213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 23769955 - 23769771
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  23769955 gtagacgtctgttagcttcagaattagtaacctctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtagctttgtt 23769856  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
     ||||||||||||||||||||| |||  |||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  23769855 acatgctagtttccatattcatattagaattctatcttgtatctctactattattatgaatgaaatgcaataagtttgttcttgt 23769771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 22605884 - 22606061
Alignment:
Q  26 tctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 125  Q
    |||||||||||||||||||||||| |||||||||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  22605884 tctgttagcttctgatttagtaacctctgatgttaggttcaatcagagacaagccaacggagtcgctcatagctttgcgagagtggttttgcgtcatgct 22605983  T
Q  126 agtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||| ||||||||| ||| ||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||    
T  22605984 agttttcatattcatattaggattccatcttgtatctctacaattattatgaatgaaatgcaatcagtttcttcttgt 22606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 38451864 - 38451689
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  38451864 ctgttagcttctgatttattaacctctaatgttaggttttttcggagacaagccaacgaaatcgctcatagctttgctagagtggctttgcaccatgcta 38451765  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||| |||  ||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  38451764 gtttccatattcatattagaatttcatcttgtatct-tactattattatgaatgaaatgcaataagtttcttcttgt 38451689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 23407920 - 23407745
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| |||| |||  || ||| || |||||||||    
T  23407920 tgttagcttctgatttagtaacctctaatgttaggtttattcggagacaagcaaacaaagtcgctcatagttttgttaggatgtcttcgcatcatgctag 23407821  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  23407820 tttccatattcatattaagattccatcttatatctctactattattatgaacgaaatgcaataaatttcttcttgt 23407745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 11616661 - 11616774
Alignment:
Q  90 gctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaat 189  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| ||||| |||||| ||||||||| |||||||||||||||    
T  11616661 gctcatagctttgctagagtgactttacgtcatgctagtttccatattcatattaggattctatcttgtatctctactattattttgaatgaaatgcaat 11616760  T
Q  190 aagtttcttcttgt 203  Q
    ||||||||||||||    
T  11616761 aagtttcttcttgt 11616774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 1604827 - 1604998
Alignment:
Q  31 tagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagttt 130  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||  |||| |||||| |||||| || |||||||||| || | |||||| ||||||    
T  1604827 tagcttctgatttagtaacatctgatattaggtttattaggagacaaatcaacaaagtcgttcatagtttcgctagagtggattagtgtcatgttagttt 1604926  T
Q  131 ccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
     | ||||||| || |||||||||||| ||| ||   ||||||||| ||||||| |||||||||||||||||||    
T  1604927 tcgtattcatatt-agattccatcttttatatctcttattattataaatgaaacgcaataagtttcttcttgt 1604998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 31411483 - 31411362
Alignment:
Q  81 aacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatg 180  Q
    |||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||| |||| |||||| ||| || | ||||||||||||||    
T  31411483 aacgaagtcgttcatagctttgctagagtgactttgtgtcattctagtttccatattcatattaggatttcatcttgtatatctattattattatgaatg 31411384  T
Q  181 aaatgcaataagtttcttcttg 202  Q
    |||| |||||||||||||||||    
T  31411383 aaatacaataagtttcttcttg 31411362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 40074201 - 40074066
Alignment:
Q  26 tctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgct 125  Q
    |||||| ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| ||||||||||||| ||||||| | |||||| ||||||||||    
T  40074201 tctgtttgcttctgatttagcaacctctaatgttaggtttattag-agacaagccaacaaagtcgctcatagttttgctaaa-tggcttcgcgtcatgct 40074104  T
Q  126 agtttccatattcattttaagattccatcttatatctc 163  Q
    ||||| ||||||||| ||||||||||||||| ||||||    
T  40074103 agttttcatattcatattaagattccatcttgtatctc 40074066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 27177683 - 27177864
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| ||| ||||||  |||||||||||| | |||||| |||||||||  |||||||||||||||||| |||||||| ||  ||||   ||||||| |    
T  27177683 gtagacgtctattagctcttgatttagtaacctttgatgtcaggtttattatgagacaagccaacgaagtagctcatagtttcactaggacggctttgtg 27177782  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 200  Q
    |||| || |||||||||||||| |||||||||| |  | |||||| ||||||||| | | |||||| |||||||||||||||    
T  27177783 tcattcttgtttccatattcatattaagattccgttgtgtatctctactattattttaattgaaatacaataagtttcttct 27177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 32025536 - 32025662
Alignment:
Q  76 aagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattat 175  Q
    ||||||| ||||| ||||||||||||||||||||| |||   |||||||||||||||||||| || |||  ||| ||| ||||||||| || ||||||||    
T  32025536 aagccaatgaagttgctcatagctttgctagagtgacttcatgtcatgctagtttccatatttatattagaatttcatgttatatctctacaattattat 32025635  T
Q  176 gaatgaaatgcaataagtttcttcttgt 203  Q
     ||| ||| || ||||||||||||||||    
T  32025636 -aataaaacgctataagtttcttcttgt 32025662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 555
Target Start/End: Original strand, 10480957 - 10481079
Alignment:
Q  433 tctagtatataaacactaatagttggtgctaatttttcaatgccggacatcgacaattttcaattcacacacccgttcaaaatcttaagattcgatgttt 532  Q
    |||| |||||||||||||||||||||||||||||||   |||| |||| |  || |||||||||| |||||   ||| ||| | |||||| ||| ||| |    
T  10480957 tctactatataaacactaatagttggtgctaattttctgatgcaggactttcactattttcaattgacacagtagtttaaagttttaagactcggtgtct 10481056  T
Q  533 actcttcaatttcccaccaattc 555  Q
     ||||||||||||||| ||||||    
T  10481057 cctcttcaatttcccatcaattc 10481079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 20214301 - 20214346
Alignment:
Q  158 tatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||    
T  20214301 tatctctactattattttgaatgaaatgcaataagtttcttcttgt 20214346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 28317799 - 28317883
Alignment:
Q  107 agtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataa 191  Q
    ||||| |||| |||||| || ||| |||||| || |||||||| ||||||||||||| ||||||||| | ||| |||||||||||    
T  28317799 agtggttttgtgtcatgataattttcatatttatattaagatttcatcttatatctctactattattttaaataaaatgcaataa 28317883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 18731665 - 18731728
Alignment:
Q  34 cttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatag 97  Q
    |||||||||||| ||||| |||||||| ||||||| ||||| |||| |||||||| ||||||||    
T  18731665 cttctgatttagcaacatttgatgttatgtttattaggagataagcaaacgaagttgctcatag 18731728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 1605079 - 1605115
Alignment:
Q  167 tattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  1605079 tattattataaataaaatgcaataagtttcttcttgt 1605115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 2379 - 2195
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  2379 gtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcgcagacaagccaacgaagtcgctcatagctttgctagagtgactttgcg 2280  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||||||||||||||||||| ||| ||||| ||||| |||||| |||||||||||||||||||||||| |||||| |||||||    
T  2279 tcatgctagtttccatattcatattaggattctatcttgtatctctactattattatgaatgaaatgcaagaagtttattcttgt 2195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 6683 - 6856
Alignment:
Q  30 ttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtt 129  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6683 ttagcttctgatttagtaacctctgatgttaggttcattcggagacaagacaacgaagtcgctcatagctttgctagagcggctttgcgtcatgctagtt 6782  T
Q  130 tccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||    
T  6783 tccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttattcttgt 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 48522162 - 48522307
Alignment:
Q  58 ttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatctta 157  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48522162 ttaggtttattcggagacaagtcaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaagattccatctta 48522261  T
Q  158 tatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  48522262 tatctctactattattataaatgaaatgcaataagtttcttcttgt 48522307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 25070976 - 25070822
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||                     |||    
T  25070976 tgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaacgaagttgctcatagttttgc---------------------tag 25070898  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||    
T  25070897 tttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgt 25070822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 19956504 - 19956676
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||| |||| |||||| ||| ||| || ||| ||||||| |||||||| |||||||||||||| |||| |||||||| || || |  || | |||||     
T  19956504 tgttagtttctaatttagcaacctcttattttaagtttatttggagacaaaccaacgaagtcgcttatagttttgctagggttgcctcccgccttgcta- 19956602  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
      ||||||| ||| ||| ||||||||||| |||||  | ||||||||||||||||||| |||||||||||||||||    
T  19956603 --tccatatgcatattaggattccatcttgtatctataatattattatgaatgaaatggaataagtttcttcttgt 19956676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 26347349 - 26347485
Alignment:
Q  67 ttcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaac 166  Q
    |||||||||||  ||| ||||||||||||| | ||  |||||||||||| | |||| ||| |||| ||||| || ||| ||||||||||| |||||| ||    
T  26347349 ttcggagacaaatcaatgaagtcgctcataaccttattagagtggctttacatcatactaatttctatatttatattatgattccatcttgtatctctac 26347448  T
Q  167 tattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||||| ||||  ||||| |||||||||||    
T  26347449 tattattatgaataaaataaaataaatttcttcttgt 26347485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 11079900 - 11080068
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||||  ||||||||||  ||||| |||||||| |||||||||| ||| |||||||| ||||||||||| || |||| || || || | | ||  | |    
T  11079900 gtagacacatgttagcttcaaatttaataacatcttatgttaggttcattaggagacaaaccaacgaagtctcttatagtttagcaagggcgactccgtg 11079999  T
Q  119 tcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgca 187  Q
    ||| |||||||||  ||||||| | | ||||||||||| |||||| || |||||||| |||||||||||    
T  11080000 tcaggctagtttctgtattcatatcaggattccatcttgtatctctacgattattataaatgaaatgca 11080068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 25698549 - 25698684
Alignment:
Q  19 gtagacatctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcg 118  Q
    |||||||| ||||| |||||||||||| ||| | |||||||| ||||||| ||||||||| ||||||||||  |||||| || || |  ||  |||||      
T  25698549 gtagacatatgttaacttctgatttagcaacctttgatgttacgtttatttggagacaagtcaacgaagtctttcatagattagcaatggtaactttgta 25698648  T
Q  119 tcatgctagtttccatattcattttaagattccatc 154  Q
    |||||||||||| |||||| || |||| ||| ||||    
T  25698649 tcatgctagttttcatatttatattaaaatttcatc 25698684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 15393568 - 15393504
Alignment:
Q  134 tattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttctt 198  Q
    ||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||| |||| |||||    
T  15393568 tattcatattaagatttcatcttgtatctctactgttattataaatgaaatgcattaagcttctt 15393504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 31592302 - 31592386
Alignment:
Q  53 tgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatatt 137  Q
    |||||| ||||||||| ||||||||||||| ||||| |||||||| || ||||| || |||    ||||||||||||||| ||||    
T  31592302 tgatgtgaggtttattaggagacaagccaatgaagttgctcatagtttagctagggtagctccatgtcatgctagtttccgtatt 31592386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 15327478 - 15327523
Alignment:
Q  45 gtaacatctgatgttaggtttattcggagacaagccaacgaagtcg 90  Q
    ||||| |||||||||||||| ||| ||||||||||||| |||||||    
T  15327478 gtaacttctgatgttaggttcattaggagacaagccaatgaagtcg 15327523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 48519021 - 48519061
Alignment:
Q  20 tagacatctgttagcttctgatttagtaacatctgatgtta 60  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  48519021 tagacgtctgttagcttctgatttagtaatctctgatgtta 48519061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 5258 - 5431
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||    
T  5258 ctgttagcttttgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcataactttgctatagtgactttgcatcatgcta 5357  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttct 200  Q
     ||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5358 atttccatattcatattaaaattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttct 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 27110 - 26934
Alignment:
Q  27 ctgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 126  Q
    |||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27110 ctgttatcttctgatttcgtaacctctgattttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgcta 27011  T
Q  127 gtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    |||| ||||||||| |||  ||| |||||| ||||||  |||||||||||||||||||||||||||||| |||||||    
T  27010 gttttcatattcatattagaatttcatcttgtatctctgctattattatgaatgaaatgcaataagttttttcttgt 26934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 58370 - 58543
Alignment:
Q  30 ttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtt 129  Q
    ||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||    
T  58370 ttagcttctgatttaataacctctgatgttaggtttattggaagacaagccaacgaagtctctcatagctttgctcgagtggctttatgtcatgctagtt 58469  T
Q  130 tccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||||||| ||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  58470 tccatattcatattagggttccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 58543  T

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Target: scaffold0004 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 216430 - 216576
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctag 127  Q
    |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  216430 tgttagattctgatttagtaacctttgatgttaggtttattcggagacaagccaacgaagtcgctcattcctttgctagagtggctttgcgccatgctag 216529  T
Q  128 tttccatattcattttaagattccatcttatatctcaactattatta 174  Q
    ||| ||||||||| ||| |||||||||| ||||||| ||||||||||    
T  216530 ttttcatattcatattaggattccatctaatatctctactattatta 216576  T

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Target: scaffold0360 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 5399 - 5316
Alignment:
Q  112 ctttgcgtcatgctagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagttt 195  Q
    |||||||||||| ||||||  |||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  5399 ctttgcgtcatgttagtttttatattcatattaagattccatcttgtatctctactattatcatgaatgaaatgcaataagttt 5316  T

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Target: scaffold0201 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 20695 - 20773
Alignment:
Q  125 tagtttccatattcattttaagattccatcttatatctcaactattattatgaatgaaatgcaataagtttcttcttgt 203  Q
    ||||||| |||||||| |||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  20695 tagtttctatattcatattaagattacatcttgtatctctactattattataaatgaaatgcaataagtttcttcttgt 20773  T

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Target: scaffold0201; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 20625 - 20686
Alignment:
Q  28 tgttagcttctgatttagtaacatctgatgttaggtttattcggagacaagccaacgaagtc 89  Q
    ||||||||| |||||||| ||    |||||||||||||| || |||||||||||||||||||    
T  20625 tgttagcttgtgatttagcaattgatgatgttaggtttaatcagagacaagccaacgaagtc 20686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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