View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_high_20 (Length: 254)
Name: NF11878_high_20
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 35999944 - 35999709
Alignment:
| Q |
19 |
ggtctttcttgtgatttgaggtacaaacttttcaacaatagtttggacaatgatcttatgagatcaataatgatttgacatttttattnnnnnnnttcaa |
118 |
Q |
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| T |
35999944 |
ggtctttcttgtgatttgaggtacaaacttttcaacaatagtttggacaatgatcttatgagatcaataatgatttgacatttttattaaaaaaattcaa |
35999845 |
T |
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| Q |
119 |
attgagatataaagggagactgagagcacatacttccggatcttccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgata |
218 |
Q |
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| T |
35999844 |
attgagatataaagggagactgagagcacatacttccggatcttccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgata |
35999745 |
T |
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| Q |
219 |
ctcacactttctgcacttggtttaaagttttcattc |
254 |
Q |
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| T |
35999744 |
ctcacactttctgcacttggtttaaagttttcattc |
35999709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 35995266 - 35995042
Alignment:
| Q |
29 |
gtgatttgaggtacaaacttttcaacaatagtttggacaatgatcttatgagatcaataatgatttgacatttttattnnnnnnnttcaaattgagatat |
128 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35995266 |
gtgatgtgaggtacaaacttttcaacaattgtttggacaatgatcttatgagatcaataatgatttgacatttttattaaaaaa-ttcaaattgagatat |
35995168 |
T |
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| Q |
129 |
aaagggagactgagagcacatacttccggatcttccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgatactcacacttt |
228 |
Q |
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| T |
35995167 |
aaagggagactgagagcagatacttccggatcttccttgccaaacaagcttattctattttatttttcttcacctttatatgatatgatactcacacttt |
35995068 |
T |
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| Q |
229 |
ctgcacttggtttaaagttttcattc |
254 |
Q |
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| T |
35995067 |
cttcacttggtttaaagttttcattc |
35995042 |
T |
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