View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_high_7 (Length: 364)
Name: NF11878_high_7
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 53805214 - 53804878
Alignment:
| Q |
10 |
agaagaatgtagcaattctccgaaaatggaatctgtgaaaggtttttctgaaacagtgaaagagattcagattctatttgaaagggcatcggattcaggg |
109 |
Q |
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| T |
53805214 |
agaagaatgtagcaattctccgaaaatggaatctgtgaaaggtttttctgaaacagtgaaagagattcagattctatttgaaagggcatcggattcaggg |
53805115 |
T |
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| Q |
110 |
aatgtgattttggaaatgctagacgttggaaaacttcgttaccattcaaaaattgaactcaatccaggtaagcaagcaagttgtacaatttaattagtca |
209 |
Q |
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| T |
53805114 |
aatgtgattttggaaatgctagacgttggaaaacttcgttaccattcaaaaattgaactcaatccaggtaagcaagcaagttgtacaatttaattagtca |
53805015 |
T |
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| Q |
210 |
ttctttagtgttttcaattattaagtaatcaaaataattaactaaattgagatttttggtaattagtttcgtgcaagattatgcatgtgtttactccatc |
309 |
Q |
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| T |
53805014 |
ttgtttagtgttttcaattattaagtaatcaaaataattaactaaattgagatttttggtaattagtttcgtgcaagattatgcatgtgtttactccatc |
53804915 |
T |
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| Q |
310 |
gaatccactaatggttaaatgcgtggaatcaccatgt |
346 |
Q |
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| T |
53804914 |
gaatcccctaatggttaaatgcgtggaatcaccatgt |
53804878 |
T |
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