View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_high_8 (Length: 362)
Name: NF11878_high_8
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 52251032 - 52250688
Alignment:
| Q |
1 |
acaggtaatttgaaagattcttgggttggtggaaatactgggttcccattgatggatagaattttggttccttatacacagcagaaacttacttggacac |
100 |
Q |
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| T |
52251032 |
acagggaatttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttatacacatcagaatcttacttggacac |
52250933 |
T |
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| Q |
101 |
agaacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggataga |
200 |
Q |
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| T |
52250932 |
agcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggataga |
52250833 |
T |
|
| Q |
201 |
ggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaatttt |
300 |
Q |
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| T |
52250832 |
ggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaatttt |
52250733 |
T |
|
| Q |
301 |
gaactttttgatgatgaaatggttgctgagaatggtgtgaaatct |
345 |
Q |
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| T |
52250732 |
gaactttttgatgatgaaatggttgctgagaatggtgtgaaatct |
52250688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 52262667 - 52262339
Alignment:
| Q |
8 |
atttgaaagattcttgggttggtggaaatactgggttcccattgatggatagaattttggttccttatacacagcagaaacttacttggacacagaacgc |
107 |
Q |
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| T |
52262667 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
52262568 |
T |
|
| Q |
108 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
207 |
Q |
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| T |
52262567 |
gtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaa |
52262468 |
T |
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| Q |
208 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaacttt |
307 |
Q |
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| T |
52262467 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggat-ctggatggaattttgaattgt |
52262369 |
T |
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| Q |
308 |
ttgatgatgaaatggttgctgagaatggtg |
337 |
Q |
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| T |
52262368 |
ttgatgatgaaatggtggctgagaatggtg |
52262339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 3698867 - 3698992
Alignment:
| Q |
164 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
263 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| | | || ||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
3698867 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtga |
3698966 |
T |
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| Q |
264 |
aatgaggaatgagaagatggatcctg |
289 |
Q |
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|||| |||||| |||||||||| |
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| T |
3698967 |
gatgaaaggtgagaaaatggatcctg |
3698992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 3702555 - 3702680
Alignment:
| Q |
164 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
263 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
3702555 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
3702654 |
T |
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| Q |
264 |
aatgaggaatgagaagatggatcctg |
289 |
Q |
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|||| |||||| |||||||||| |
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| T |
3702655 |
gatgaaaggtgagaaaatggatcctg |
3702680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 17602848 - 17602953
Alignment:
| Q |
220 |
cctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatgaaa |
319 |
Q |
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|||| ||||||||||||||||||||| | |||||||||||||| || | |||||| | |||||| || |||||| ||||| ||||||||||||||| |
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| T |
17602848 |
cctgttgttcttggtgcttgttgtgtgcttcataatatttgtgagattatgaatgaagaaatggatgatgaatggaagtttgaggtttttgatgatgaaa |
17602947 |
T |
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| Q |
320 |
tggttg |
325 |
Q |
| |
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|||||| |
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| T |
17602948 |
tggttg |
17602953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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