View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11878_high_9 (Length: 359)
Name: NF11878_high_9
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 41677736 - 41678063
Alignment:
| Q |
12 |
gagatgaaactattttttgagtcaattatttcaccataacatagctttactattttgtttcttgatataataatacaagtaccttccaacataacataaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41677736 |
gagatgaaactattttttgagtcaattatttcaccataacatagctttaccattttgtttcttgatataataatacaagtaccttccaacataacataaa |
41677835 |
T |
|
| Q |
112 |
-catacttcctaaatagaatnnnnnnnntcattgaaaacactatttgatttccataaaaacagataattcaatcatcaatagtcctgataaataacaaga |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41677836 |
acatacttcctaaatagaataaaaaaaatcattgaaaacact--ttgatttccataaaaacagataattcaatcatcaatagtcctgataaataacaaga |
41677933 |
T |
|
| Q |
211 |
gatggcacaactcaccacatatttctatgttgctcggttatagcacaaaataaaatatttgaagcaaaagataaacttgttttgatcaaacctcatgtgc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41677934 |
gatggcacaactcaccacatatttctatgttgctcggttatagcacaaaataaaatatttgaagcaaaatataaacttgttttgatcaaacctcatgtgc |
41678033 |
T |
|
| Q |
311 |
aagactccacaaatgtgatttaccatcgtg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41678034 |
aagactccacaaatgtgatttaccatcgtg |
41678063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 340
Target Start/End: Original strand, 41688556 - 41688724
Alignment:
| Q |
178 |
ttcaatcatcaatagtcctgataaataacaagagatggcacaactcaccacatatttctatgttgctcggttatagcacaaaataaaatatttgaagc-- |
275 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||| | |
|
|
| T |
41688556 |
ttcaatcatcaatattacttataaaacacaagagatggcacaactcaccacatatttctatgttgctcaattatagcccaa---aaaatatccgaaacaa |
41688652 |
T |
|
| Q |
276 |
aaaagataaacttgttttgatcaaacctcatgtgcaagac-------tccacaaatgtgatttaccatcgtg |
340 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41688653 |
aaaagataaacttgttttaatcaaaatccgtgtgcaagactctatagtccacaaatgtgatttaccatcgtg |
41688724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University