View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_1 (Length: 799)
Name: NF11878_low_1
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_1 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 17 - 784
Target Start/End: Complemental strand, 45787529 - 45786759
Alignment:
| Q |
17 |
taacatcaccatcatgcaccatccaa---gtcaataagcccaccctcgatttccaatctcaccataactcctccgataccatcatcgcactttcatccga |
113 |
Q |
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| T |
45787529 |
taacatcaccatcatgcaccatccaacaagtcaataaacccaccctcgatttccaatctcaccataactcctccgataccatcatcgcactttcatccga |
45787430 |
T |
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| Q |
114 |
aacctttaacttccctcgttgtggcgtgaatttcacagaatacacaccatgtgaggatccgacgagatcattgaggtataagcggagtagaatgatttat |
213 |
Q |
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| T |
45787429 |
aacctttaacttccctcgttgtggcgtgaatttcacagaatacacaccatgtgaggatccgactagatctttgaggtataagcggagtagaatgatttat |
45787330 |
T |
|
| Q |
214 |
agggaaagacactgtccggttaaaggggaagaggatctgaagtgtagggttcctccacctcatggttacaagactccttttacttggccggctagtaggg |
313 |
Q |
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| T |
45787329 |
agggaaagacactgtccggttaaaggggaagaggatctgaagtgtagggttcctccacctcatggttacaagactccttttacttggccggctagtaggg |
45787230 |
T |
|
| Q |
314 |
atgttgcttggtatgctaatgtccctcaccgtgaactcaccgttgaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccgg |
413 |
Q |
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| T |
45787229 |
atgttgcttggtatgctaatgtccctcaccgtgaactcactgttgaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccgg |
45787130 |
T |
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| Q |
414 |
cggtggaaccatgttccctaatggagctggtgcatatattgatgatataggaaagttgataaatctcaaagatggttctattaggactgcacttgatact |
513 |
Q |
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| T |
45787129 |
cggtggaaccatgttccctaatggagctggtgcatatattgatgatataggaaagttgataaatctcaaagatggttctattaggactgcacttgatact |
45787030 |
T |
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| Q |
514 |
ggctgtggggtatactctctaattcttgttcttgctcttattttttattgtaaaaatatagtaaatcgaaatatttgtgcatttaattagggattctgtc |
613 |
Q |
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| T |
45787029 |
ggctgtggggtatactctctaattcttgttcttgctcttattttttattctaaaaatatagtaaatcgaaatatttgtgcatttaattagggattctgtc |
45786930 |
T |
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| Q |
614 |
aaaaaatagttttatttgggggatacctttgtcttttgcttaatcttctttaatttttaccgtcgtgtatacgtcnnnnnnngtctccacgagtgcaaca |
713 |
Q |
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| T |
45786929 |
aaaaaatagtttaatttgggggatacctttgtcttttgcttaatcttctttaatttttatcgtcgtgtatacgtctttttttgtctccacgagtgcaaca |
45786830 |
T |
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| Q |
714 |
attttttatttatttatggaaaaatcggatttatcgcactttttatgaaagatttatggcaatcacagtgc |
784 |
Q |
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| T |
45786829 |
aatttttatttatttatggaaaaatcggatttatcgcactttttatgaaagatttatggcaattacagtgc |
45786759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 319 - 525
Target Start/End: Complemental strand, 70601 - 70395
Alignment:
| Q |
319 |
gcttggtatgctaatgtccctcaccgtgaactcaccgttgaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccggcggtg |
418 |
Q |
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||||||||||| ||||| ||| ||||| | | || || |||||||||| ||| ||||||||||| | ||||||||| |||| |||||| || |||| |
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| T |
70601 |
gcttggtatgcaaatgtaccttaccgtcatttaacggtggaaaaagctggtcaaaattggatccgttttgacggtgataagttccgttttcctggtggtg |
70502 |
T |
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| Q |
419 |
gaaccatgttccctaatggagctggtgcatatattgatgatataggaaagttgataaatctcaaagatggttctattaggactgcacttgatactggctg |
518 |
Q |
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| T |
70501 |
gtactatgtttcctaatggtgctgataagtatattgatgatattgggaagttgattgatcttgaagatggttctgttagaactgctgttgatactggttg |
70402 |
T |
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| Q |
519 |
tggggta |
525 |
Q |
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| T |
70401 |
tggggta |
70395 |
T |
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