View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_12 (Length: 344)
Name: NF11878_low_12
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 14393197 - 14393515
Alignment:
| Q |
16 |
agatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggtata |
115 |
Q |
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| T |
14393197 |
agatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggtata |
14393296 |
T |
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| Q |
116 |
tttcgacaattcactgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgttcttcatttacgatatcaattgtgtattaacata |
215 |
Q |
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| T |
14393297 |
tttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgttcttcatttacgatatcaattgtgtattaacata |
14393396 |
T |
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| Q |
216 |
tatcaaggaacaaaagcatgtggatcattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaagatatgaagccaaaccctctaata |
315 |
Q |
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| T |
14393397 |
tatcaaggaacaaaagtatgtggatcattgaagagataatagtgttggacttaagtcccacatcggtcaaaataaagatatgaagccaaaccctctaata |
14393496 |
T |
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| Q |
316 |
taaaaatcaaactcctatg |
334 |
Q |
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| T |
14393497 |
taaaaatcaaactcctatg |
14393515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 14396293 - 14396391
Alignment:
| Q |
234 |
tgtggatcattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaagatatgaagc-caaaccctctaatataaaaatcaaactcct |
331 |
Q |
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| T |
14396293 |
tgtggatcattgaagagataatagtgttagacttatgccccacatcgctcaaaataaagacatgaagctaaaaccctctaatataaaaatcaaactcct |
14396391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 14358345 - 14358302
Alignment:
| Q |
130 |
tgtaattacaattctgtatgtttaactattttcttagtcttgat |
173 |
Q |
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| T |
14358345 |
tgtaattacaattctgtatgtttaaatatttctttagtcttgat |
14358302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 14390339 - 14390406
Alignment:
| Q |
264 |
acttaagtcccacatcgctcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcct |
331 |
Q |
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|||||| |||||||||||| ||| | |||| ||| |||||| ||||||||||||||||| ||||||| |
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| T |
14390339 |
acttaaatcccacatcgctgaaagtcaagacgtgaggccaaaacctctaatataaaaatcgaactcct |
14390406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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