View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_13 (Length: 339)
Name: NF11878_low_13
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15443732 - 15443973
Alignment:
| Q |
1 |
tataattatatatgttggtgttgtgtcgatgtcgaacaacgacgcatgtctgataccggaacatgcctaatccgagaagtatctgtgtttaataattatt |
100 |
Q |
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| T |
15443732 |
tataattatatatgttggtgttgtgtcgatgtcgaacaacaacgcatgtttgataccggaacatgcctaatccaatgagtatccgtgtttaataattatt |
15443831 |
T |
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| Q |
101 |
attctattacaacaattcaaaatttaggcgagaccgataataaataagagaaaagtcaacaaactacaccacacaagaaggacgacacaactagataaaa |
200 |
Q |
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| T |
15443832 |
attctattacaacaattcaaaatttaggcgagaccgataatgaataagagaaaagtcatcaagctacaccacacaagaaggacgacataactagataaaa |
15443931 |
T |
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| Q |
201 |
aattacaacgaacagcgtaaatatacggcaaccttaatctca |
242 |
Q |
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| T |
15443932 |
aattacaacgagcaccgtaaatatacggcaaccttaatctca |
15443973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 15443961 - 15444002
Alignment:
| Q |
287 |
aaccttaatctcatctactatgtcattgtcatccaccccctt |
328 |
Q |
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| T |
15443961 |
aaccttaatctcatctaccatttcattgtcatccaccccctt |
15444002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11424733 - 11424696
Alignment:
| Q |
1 |
tataattatatatgttggtgttgtgtcgatgtcgaaca |
38 |
Q |
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| T |
11424733 |
tataattatatgtgttggtgttgtgtcggtgtcgaaca |
11424696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 24205839 - 24205753
Alignment:
| Q |
3 |
taattatatatgttggtgttgtgtcgatgtcgaacaacgacgcatgtctgataccggaacatgcctaatccgagaagtatctgtgttt |
90 |
Q |
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| T |
24205839 |
taataatatgtgttggtgttgtgtcggtgtcgaaca-caacgcatgtctgacaccggaacacgcctaatccgaggagtgtccgtgttt |
24205753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 27903680 - 27903742
Alignment:
| Q |
18 |
gtgttgtgtcgatgtcgaacaacgacgcatgtctgataccggaacatgcctaatccgagaagt |
80 |
Q |
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| T |
27903680 |
gtgttgtgtcggtgtcggataccgacgcgtgtctgacactggatcatgcctaatccgagaagt |
27903742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 26733351 - 26733418
Alignment:
| Q |
22 |
tgtgtcgatgtcgaacaacgacgcatgtctgataccggaacatgcctaatccgagaagtatctgtgttt |
90 |
Q |
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| T |
26733351 |
tgtgtcggtgtcggaca-cgacgcatgtccgatacgggaacacgcctaatccgaggggtgtctgtgttt |
26733418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 47210304 - 47210252
Alignment:
| Q |
260 |
tctatgcaagctacattgccaagacaaaaccttaatctcatctactatgtcat |
312 |
Q |
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| T |
47210304 |
tctatgcaagctccattgccaagacaaaatcttgatttcatccaccatgtcat |
47210252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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