View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_15 (Length: 327)
Name: NF11878_low_15
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 6515750 - 6515837
Alignment:
| Q |
21 |
acacgtcacaaggaaaaatgcaaacaaaccattgttaaagaagcggaaaacaccagtagattaggatcctctgcaaccgttacatagt |
108 |
Q |
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| T |
6515750 |
acacgtcacaaggaaaaatgcaaacaaaccattgttaaagaagcggaaaacaccagtagattaggatcctctgcaaccgttacatagt |
6515837 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 6515926 - 6515970
Alignment:
| Q |
107 |
gttgcagatgatccatacccaacaacatagaaatcaaacacaaaa |
151 |
Q |
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| T |
6515926 |
gttgcagatgatccatacccaacaacatagaaatcaaacaaaaaa |
6515970 |
T |
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