View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11878_low_2 (Length: 586)

Name: NF11878_low_2
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11878_low_2
NF11878_low_2
[»] chr2 (2 HSPs)
chr2 (89-270)||(2705899-2706080)
chr2 (366-539)||(2705622-2705795)
[»] chr8 (3 HSPs)
chr8 (89-270)||(14789008-14789186)
chr8 (366-539)||(14789288-14789461)
chr8 (134-192)||(29640105-29640163)
[»] scaffold0003 (4 HSPs)
scaffold0003 (131-198)||(207621-207688)
scaffold0003 (378-453)||(208111-208186)
scaffold0003 (131-198)||(212673-212740)
scaffold0003 (378-453)||(213163-213238)
[»] chr5 (6 HSPs)
chr5 (378-453)||(22311520-22311595)
chr5 (135-198)||(22311026-22311089)
chr5 (131-198)||(36098081-36098148)
chr5 (379-449)||(24275945-24276015)
chr5 (379-449)||(24386198-24386268)
chr5 (378-453)||(36098571-36098646)
[»] scaffold0077 (4 HSPs)
scaffold0077 (131-198)||(47661-47728)
scaffold0077 (378-453)||(48549-48624)
scaffold0077 (378-453)||(58304-58379)
scaffold0077 (131-163)||(39830-39862)
[»] chr3 (1 HSPs)
chr3 (378-453)||(41931940-41932015)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 2706080 - 2705899
Alignment:
Q  89 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttcc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  2706080 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgttatcaatatttcttctacttggccccgctctattgttatgagttcc 2705981  T
Q  189 ttgagaatatgctcgcttcatatgagttcctagagaatatgatgagtcaaaatgttgctctgtaagttctaatatagacagt 270  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  2705980 ttgagaatatggccgcttcatatgagttcctagagaatatgatgaatcaaaatgctgctcagtaagttctaatatagacagt 2705899  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 366 - 539
Target Start/End: Complemental strand, 2705795 - 2705622
Alignment:
Q  366 cactaagcctcatcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgtctatgacactcg 465  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  2705795 cactaagcctcaccatgtgttccttgaacatgtgacaatgcaaaatagatatttgtcaaatcctgaaatggcatcatgtgctctccgtctatgacattcg 2705696  T
Q  466 ttatttccacttgtttatctttgtccttcgtctgactgtaatttgatcgtctttcagacaattcttgctgtcta 539  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  2705695 ttatttccacttgtttatctttgtccttcgtatgactgtaattcgatcgtctttcagacaattcttgctgtcta 2705622  T

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Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 89 - 270
Target Start/End: Original strand, 14789008 - 14789186
Alignment:
Q  89 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttcc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  14789008 taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttggccctgctctattgttatgagttcc 14789107  T
Q  189 ttgagaatatgctcgcttcatatgagttcctagagaatatgatgagtcaaaatgttgctctgtaagttctaatatagacagt 270  Q
    ||||||||||||||||||||||||||||||||||||||   |||| |||||||| |||||||||||||||||||||||||||    
T  14789108 ttgagaatatgctcgcttcatatgagttcctagagaat---atgaatcaaaatgctgctctgtaagttctaatatagacagt 14789186  T

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Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 366 - 539
Target Start/End: Original strand, 14789288 - 14789461
Alignment:
Q  366 cactaagcctcatcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgtctatgacactcg 465  Q
    ||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  14789288 cactaagcctcatcatgtgttccttgaacatgtgacaatacaaaatagaaatttgtcaaatcctaaaatggcatcatgtgctctcagtctatgacactcg 14789387  T
Q  466 ttatttccacttgtttatctttgtccttcgtctgactgtaatttgatcgtctttcagacaattcttgctgtcta 539  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  14789388 ttatttccacttgtttatctttatccttcgtctgactgtaatttgatcgtctttcagacaattcctgctatcta 14789461  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 29640105 - 29640163
Alignment:
Q  134 ttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttga 192  Q
    |||||||||||||| |||||||||||||| | ||||||  ||||| ||||||| |||||    
T  29640105 ttgtagtgtcatcactatttcttctacttaatcccgcttcattgtcatgagtttcttga 29640163  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 207621 - 207688
Alignment:
Q  131 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 198  Q
    ||||||||||||||||| |||||||||||||||  ||||||  ||||| ||||||||||||| |||||    
T  207621 cacttgtagtgtcatcattatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat 207688  T

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Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 208111 - 208186
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  208111 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattaaatggcatcatgtgatctctgt 208186  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 212673 - 212740
Alignment:
Q  131 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 198  Q
    ||||| ||||||||| | |||||||||||||||  ||||||  ||||| ||||||||||||| |||||    
T  212673 cacttttagtgtcataactatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat 212740  T

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Target: scaffold0003; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 213163 - 213238
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | | ||||||||||||| |||||||    
T  213163 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattagatggcatcatgtgatctctgt 213238  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 22311520 - 22311595
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| |||||||||||||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  22311520 tcatgtgttccttgaacatgtgacgatgtaaaatttaaatttgtcaaatcattaaatggcatcatgtgatctctgt 22311595  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 22311026 - 22311089
Alignment:
Q  135 tgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 198  Q
    ||||||||||||| |||||||||||||||  ||||||  ||||| ||||||||||||| |||||    
T  22311026 tgtagtgtcatcactatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat 22311089  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 36098081 - 36098148
Alignment:
Q  131 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 198  Q
    ||||||||||||||||| |||||||||||||||  ||||||  ||||| || |||||||||| |||||    
T  36098081 cacttgtagtgtcatcactatttcttctacttggtcccgcttcattgtcattagttccttgaaaatat 36098148  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 24275945 - 24276015
Alignment:
Q  379 catgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctct 449  Q
    |||||||| ||||||||||||||||  |  |||  |||||||||||||| ||||||||||||||| |||||    
T  24275945 catgtgttccttgaacatgtgacaacacacaatttaaatttgtcaaatcttgaaatggcatcatgggctct 24276015  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 24386268 - 24386198
Alignment:
Q  379 catgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctct 449  Q
    |||||||| ||||||||||||||||  |  |||  |||||||||||||| ||||||||||||||| |||||    
T  24386268 catgtgttccttgaacatgtgacaacacacaatttaaatttgtcaaatcttgaaatggcatcatgggctct 24386198  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 36098571 - 36098646
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | |||| |||||||||| |||||||    
T  36098571 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattaaatagcatcatgtgatctctgt 36098646  T

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Target: scaffold0077 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 47661 - 47728
Alignment:
Q  131 cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccttgagaatat 198  Q
    ||||||||||||||||| |||||||||||||||   |||||  ||||| ||||||||||||| |||||    
T  47661 cacttgtagtgtcatcactatttcttctacttggttccgcttcattgtcatgagttccttgaaaatat 47728  T

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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 48549 - 48624
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| ||||||||  |||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  48549 tcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaatggcatcatgtgatctctgt 48624  T

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Target: scaffold0077; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 58304 - 58379
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| ||||||||  |||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  58304 tcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaatggcatcatgtgatctctgt 58379  T

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Target: scaffold0077; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 39830 - 39862
Alignment:
Q  131 cacttgtagtgtcatcaatatttcttctacttg 163  Q
    ||||||||||||||||| |||||||||||||||    
T  39830 cacttgtagtgtcatcattatttcttctacttg 39862  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 41932015 - 41931940
Alignment:
Q  378 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 453  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | | ||||||||||||| |||||||    
T  41932015 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattacatggcatcatgtgatctctgt 41931940  T

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