View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_23 (Length: 287)
Name: NF11878_low_23
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 8363837 - 8364045
Alignment:
| Q |
66 |
atatataatgtctattttgattcatcttgaattcaaatatattaaattgatagatattggaaaagttatggattttactatgaaggttggtacattcttc |
165 |
Q |
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| T |
8363837 |
atatataatgtctattttgattcatcttgaattcaaatatattaaattgatagatattggaaaatttatggattttattatgaaggttggtacattcttc |
8363936 |
T |
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| Q |
166 |
taacaattcaacttttagcattgtcaaagtggatatgcatcaagttagatgcatttatcgagtgcccatccaaagaattttacaggatcacatggtggaa |
265 |
Q |
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| T |
8363937 |
taacaattcaacttttagtattgtcaaagtggatatgcatcaaattagatgcacttatcgaatgcccatccaaaaaaatttacaggatcacatggtggaa |
8364036 |
T |
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| Q |
266 |
tgattttga |
274 |
Q |
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||||||||| |
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| T |
8364037 |
tgattttga |
8364045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 92 - 274
Target Start/End: Original strand, 43654902 - 43655084
Alignment:
| Q |
92 |
ttgaattcaaatatattaaattgatagatattggaaaagttatggattttactatgaaggttggtacattcttctaacaattcaacttttagcattgtca |
191 |
Q |
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| T |
43654902 |
ttgaattcaaatatattaaattgatagatattggtaaagttatggattttattatgaaggttggtacattcttctaacaattcaacttttagcattgtca |
43655001 |
T |
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| Q |
192 |
aagtggatatgcatcaagttagatgcatttatcgagtgcccatccaaagaattttacaggatcacatggtggaatgattttga |
274 |
Q |
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| T |
43655002 |
aagtggatatgcatcaaattagatgcacttatcgaatgcccatccaaagaattttacaggatcacatggtggaatgattttga |
43655084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 43654766 - 43654853
Alignment:
| Q |
21 |
ataattggaaataaatttgagaaattaaaagagcaccttaaaaccatatataatgtctattttgattcatcttgaattcaaatatatt |
108 |
Q |
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| T |
43654766 |
ataattggaaataaatttgagaaattaaaagagtaccttaaagcaatatataatgtctattttgattcatcttgaattcaaatatatt |
43654853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 32404724 - 32404525
Alignment:
| Q |
78 |
tattttgattcatcttgaattcaaatatattaaattgatagatattggaaaagttatggattttactatgaaggttggtacattcttctaacaattcaac |
177 |
Q |
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| T |
32404724 |
tattttgattcatcttgaattcaaatatattaaattgatagatattggaaaagttatggattttattatgaatgttagtacattcttctaacaattcaac |
32404625 |
T |
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| Q |
178 |
ttttagcattgtcaaagtggatatgcatc-aagttagatgcatttatcgagtgcccatccaaagaattttacaggatcacatggtggaatgattttgatg |
276 |
Q |
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| T |
32404624 |
tgttaacattttctaagtgggtttgcatcaaaattagatgcacttatcgaatgcctattcaaagagttgtacaggatcacatggtggaatgattttgatg |
32404525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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