View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_25 (Length: 270)
Name: NF11878_low_25
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 13103981 - 13103729
Alignment:
| Q |
18 |
gtatgagccgaccgccaacacggacgcattcatggaacaacaaccctctgcaataaacacaacaagcatcaaagccctttcgagcacagcaaactctgac |
117 |
Q |
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| T |
13103981 |
gtatgagccgaccgccaacacggacgcattcatggaacaacaaccctctgcaataaacacaacaagcatcaaagccctttcgagcacagcaaactctgac |
13103882 |
T |
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| Q |
118 |
caagccaagaatccacaaccagaggattcatcatgatgcgactagtcttttgagcaatagaactaatggcgcggtggcagcaacccacaagccttgaaag |
217 |
Q |
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| T |
13103881 |
caagccaagaatccacaaccagaggattcatcatgatgcgactagtcttttgagcaatagaactaatggcgcggtggcagcaacccaaaagccttgaaag |
13103782 |
T |
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| Q |
218 |
cttcagatctcagcagatctggacataaccagagatcagaggcaagaaacaac |
270 |
Q |
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| T |
13103781 |
cttcagatctcagcagatctggaaataaccagagatcagaggcaagaaacaac |
13103729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 3454736 - 3454635
Alignment:
| Q |
18 |
gtatgagccgaccgccaacacggacgcattcatggaacaacaaccctctgcaataaacacaacaagcatcaaagccctttcgagcacagcaaactctgac |
117 |
Q |
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| T |
3454736 |
gtatgagccgaccgctaacacagacacattcacagactaacaaccccctgcaataaacacaacaagcatcaaagccctttcgagcacaacaaactctaac |
3454637 |
T |
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| Q |
118 |
ca |
119 |
Q |
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|| |
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| T |
3454636 |
ca |
3454635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 270
Target Start/End: Complemental strand, 3454199 - 3454060
Alignment:
| Q |
116 |
accaagccaagaatccacaaccagaggattcatcatgatgcgactagtcttttgagcaatagaactaatggcgcggtggcagcaacccacaagccttgaa |
215 |
Q |
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||||||| || ||||||||||||||||||||||| | ||| ||||||| |||| ||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
3454199 |
accaagcaaaaaatccacaaccagaggattcatcc----gtgaccagtcttt-gagctatagaaccaatggcgcagtggcagcaacctacaagccttgaa |
3454105 |
T |
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| Q |
216 |
agcttcagatctcagcagatctggacataaccagagatcagaggcaagaaacaac |
270 |
Q |
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| T |
3454104 |
aaat----------gcagatctggacataaccagggatcagaggcaagaaacaac |
3454060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 20808913 - 20808749
Alignment:
| Q |
18 |
gtatgagccgaccgccaacacggacgcattcatggaacaacaacc--ctctgcaataaa-cacaacaagcatcaaagccctttcgagcacagcaaactct |
114 |
Q |
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||||||| ||||||||||||||||||||||| | | |||||||| |||| ||||||| || | ||||||||||||||||| ||||||| ||||||| |
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| T |
20808913 |
gtatgagtcgaccgccaacacggacgcattcccgcaccaacaaccacctctccaataaaacatagcaagcatcaaagcccttctgagcacaacaaactca |
20808814 |
T |
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| Q |
115 |
gaccaagccaagaatccacaaccagaggattcatcatgatgcgactagtcttttgagcaatagaac |
180 |
Q |
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| T |
20808813 |
aaccaacttaagaatccacaaccagatgattcatcacagtgcgactagtc-cttgagcaatagaac |
20808749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 20806619 - 20806540
Alignment:
| Q |
191 |
gtggcagcaacccacaagccttgaaagcttcagatctcagcagatctggacataaccagagatcagaggcaagaaacaac |
270 |
Q |
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|||| ||||||||| ||||||||||| || ||||||||| || || |||||||||||| ||||| || |||||||||||| |
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| T |
20806619 |
gtggtagcaacccaaaagccttgaaaactgcagatctcaacaaatatggacataaccaaagatcggatgcaagaaacaac |
20806540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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