View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_28 (Length: 241)
Name: NF11878_low_28
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_28 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: scaffold0090 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 10154 - 10361
Alignment:
| Q |
18 |
aaagtcactcgaagatggatcgtcccaatttttccacgcaacaagactcctattaagatcctttcttttgtcccatccagacttcattcctgataatatt |
117 |
Q |
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| T |
10154 |
aaagtcactcgaagatggatcatcccaatttttccacgcaacgagactcctattaagatcctttcttttgtcccatccagccttcattcctgataatatt |
10253 |
T |
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| Q |
118 |
gtatcacaaggataatcaaaactttgccacaaaaaattttcttcgccgccatttttaagtactaaatttccatcgtccaagagttgcacaaatggacttg |
217 |
Q |
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| T |
10254 |
gtatcacaaggataatcaaaactttgccacaaaaaatgttcttcaccaccatttttcagtactaaatttccatcgtccaagagttgcgcaataggacttg |
10353 |
T |
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| Q |
218 |
aaaccttt |
225 |
Q |
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|||||||| |
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| T |
10354 |
aaaccttt |
10361 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 23551985 - 23551863
Alignment:
| Q |
85 |
ttgtcccatccagacttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaattttcttcgccgc---catttttaagtacta |
181 |
Q |
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| T |
23551985 |
ttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagctttgccacaagaaattctcttcatccctttcatctttaagtacta |
23551886 |
T |
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| Q |
182 |
aatttccatcgtccaagagttgc |
204 |
Q |
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| T |
23551885 |
aatttccattgtcgaggagttgc |
23551863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 28426421 - 28426350
Alignment:
| Q |
90 |
ccatccagacttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaattttcttc |
161 |
Q |
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| T |
28426421 |
ccatccacacttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttc |
28426350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 22692024 - 22692155
Alignment:
| Q |
28 |
gaagatggatcgtcccaatttttccacgcaacaagactcctattaagatcctttcttttgtcccatccagacttcattcctgataatattgtatcacaag |
127 |
Q |
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| T |
22692024 |
gaagatggatcctcccaatttttccatgcagtgagatgcctattaagacctgttcttttgtcgattccaatcttcattcccggtaacaacgtatcacagg |
22692123 |
T |
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| Q |
128 |
gataatcaaaactttgccacaaaaaattttct |
159 |
Q |
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| T |
22692124 |
gatagtcaaagccttgccacaaaaaactttct |
22692155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 28417886 - 28417817
Alignment:
| Q |
92 |
atccagacttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaattttcttc |
161 |
Q |
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| T |
28417886 |
atccaaacgtcattccaggtaatagtgtatcacaaggatggtcaaacccttgccacaaaaaactttcttc |
28417817 |
T |
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