View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_30 (Length: 225)
Name: NF11878_low_30
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 52251139 - 52251358
Alignment:
| Q |
1 |
ccttgaacagtaacagagtatgcagttttctggttcctctgagtctgcctcttattgaaataagaattcacattgttcttaggtgcaattattggaatat |
100 |
Q |
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| T |
52251139 |
ccttgaacagtaacagagtatgcagttttctggttcctctgagtctgcctcttattgaaataagaattcacattgttcttaggtgcaattattggaatat |
52251238 |
T |
|
| Q |
101 |
gtgtggtatacattgaaccaccaacatttggcattccaaaaagactctcaaactcttgtttaatcaaattcatcttattttcatcaggccaagtaataaa |
200 |
Q |
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| T |
52251239 |
gtgtggtatacattgaaccaccaacatttggcattccaaaaagaccctcaaactcttgtttaatcaaattcatcttattttcatcaggccaagtaataaa |
52251338 |
T |
|
| Q |
201 |
ctttggcataagaactttct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
52251339 |
ctttggcataagaactttct |
52251358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 52262784 - 52262998
Alignment:
| Q |
4 |
tgaacagtaacagagtatgcagttttctggttcctctgagtctgcctcttattgaaata---agaattcacattgttcttaggtgcaattattggaatat |
100 |
Q |
| |
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|||||||||| |||||| | | |||||| |||||||||||| || || ||||||||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
52262784 |
tgaacagtaaaagagtaagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcacattggagttaggtgcaattatgggaatat |
52262883 |
T |
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| Q |
101 |
gtgtggtatacattgaaccaccaacatttggcattccaaaaagactctcaaactcttgtttaatcaaattcatcttattttcatcaggccaagtaataaa |
200 |
Q |
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| T |
52262884 |
gagtagtataaactgaaccaccaacatttggtattccagaaagaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaa |
52262983 |
T |
|
| Q |
201 |
ctttggcataagaac |
215 |
Q |
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||||||||||||||| |
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| T |
52262984 |
ctttggcataagaac |
52262998 |
T |
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