View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_31 (Length: 214)
Name: NF11878_low_31
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 43654720 - 43654520
Alignment:
| Q |
1 |
cattttataacattgagtaaatttcaataagatatatttctagtaagctaaattgaatactctgtttaaaagttttaataggatagagcacaaatcatat |
100 |
Q |
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| T |
43654720 |
cattttataacatcgagtaaatttcaataagatgtatttctagtaagctaaattgaatactcagtttaaaagttttaataggatagagtacaaatcatat |
43654621 |
T |
|
| Q |
101 |
ccggttgaggcagattagccaaggagacttacctgactcttaagcttacaaatagaatgtaaaccccccacatttgtacataccggtaacattaacaaac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
43654620 |
tcggttgaggcagattagctaaggagacttacctgactctttagcttacaaatagaatgtaaaccccccacatttgtatataccagtaacatcaacaaac |
43654521 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
|
|
| T |
43654520 |
t |
43654520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8363752 - 8363546
Alignment:
| Q |
1 |
cattttataa-cattgagtaaatttcaataagatatatt------tctagtaagctaaattgaatactctgtttaaaagttttaataggatagagcacaa |
93 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||| ||||||| ||| |||| ||||| |
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| T |
8363752 |
cattttataaacattgagtaaatttcaataagatgtattcaaatttctagtaagctaaattgaatactcactt-aaaggttttaaaaggctagatcacaa |
8363654 |
T |
|
| Q |
94 |
atcatatccggttgaggcagattagccaaggagacttacctgactcttaagcttacaaatagaatgtaaaccccccacatttgtacataccggtaacatt |
193 |
Q |
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||||||| || |||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
8363653 |
atcatattcgcttgaggcagattagttaaggagacttacctgaatctttagcatacaaatagaatgtaaaccctccacatttgtacataccagtaacatc |
8363554 |
T |
|
| Q |
194 |
aacaaact |
201 |
Q |
| |
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| |||||| |
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| T |
8363553 |
agcaaact |
8363546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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