View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11878_low_4 (Length: 524)
Name: NF11878_low_4
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_4 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 55 - 506
Target Start/End: Complemental strand, 11170268 - 11169817
Alignment:
| Q |
55 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttga |
154 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11170268 |
ttatgtaaaaacatcaatgtagatgaggcggttgcatatggcgctgctgtccatgcttttatagcaagtggtgcgatttgtgaaaagtttcaagatttga |
11170169 |
T |
|
| Q |
155 |
cattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaataggga |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170168 |
cattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgggcgtaataattcctaggaataccacgattcctaccaataggga |
11170069 |
T |
|
| Q |
255 |
aaagtcattcaccacagctgaagacaacctaaaagttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagct |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170068 |
aaagtcattcaccacagctgaagacaacctaaaagttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagct |
11169969 |
T |
|
| Q |
355 |
tttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaa |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169968 |
tttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaa |
11169869 |
T |
|
| Q |
455 |
aagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagact |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169868 |
aagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagact |
11169817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 55 - 506
Target Start/End: Complemental strand, 11209090 - 11208639
Alignment:
| Q |
55 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttga |
154 |
Q |
| |
|
||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11209090 |
ttatgtaaaagcatcaatgcagatgaggcagttgcatatggcgctgctgtccatgcttttatagcaagtggtgagatttgtgaaaagtttcaagatttga |
11208991 |
T |
|
| Q |
155 |
cattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaataggga |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11208990 |
cattgagggaagtcaatcctttgtcccttggaattaatatcaaagggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatatgga |
11208891 |
T |
|
| Q |
255 |
aaagtcattcaccacagctgaagacaacctaaa-agttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagc |
353 |
Q |
| |
|
| | || |||||| |||| ||||| ||| |||| | || ||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
11208890 |
agatgtatacaccaccagtgaacccaaccaaaatagtt-tatcaatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgctaggatc |
11208792 |
T |
|
| Q |
354 |
ttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaa |
453 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11208791 |
ttttgagtttgaaattcctccatgtccaaaaggtgatcaaaaattcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggag |
11208692 |
T |
|
| Q |
454 |
aaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagact |
506 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11208691 |
aaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaagact |
11208639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 55 - 506
Target Start/End: Complemental strand, 11275652 - 11275201
Alignment:
| Q |
55 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttga |
154 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
11275652 |
ttatgcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctatccatgcttttatattgagtggtgagctttgtgaaaagtttcaagatttga |
11275553 |
T |
|
| Q |
155 |
cattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaataggga |
254 |
Q |
| |
|
|||||||||| || ||||| |||||| |||||||||| | || ||| |||||| |||| |||| |||||||||| |||||||||||| | ||| |
|
|
| T |
11275552 |
cattgagggaagttaatccattgtccattggaattaaaacacaatggggaatcatgaaaacaatatttcccaggaataccatgattcctaccaacaagga |
11275453 |
T |
|
| Q |
255 |
a-aagtcattcaccacagctgaagacaacctaaaagttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagc |
353 |
Q |
| |
|
| |||| |||||||||| || | |||| |||| || || | ||| | ||||||||||||||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
11275452 |
agaagt-attcaccacaactatacctaaccaaaaatttgttgcaattagtatttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaac |
11275354 |
T |
|
| Q |
354 |
ttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaa |
453 |
Q |
| |
|
|||| |||||||||||||||| ||||| || ||||| || || |||||||||||||||||| || |||||||||||||| | | |||||| | ||| |
|
|
| T |
11275353 |
ttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggtcaacttccaaattgacaatgatggcatcttacagttgtctgtttcagaa |
11275254 |
T |
|
| Q |
454 |
aaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagact |
506 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11275253 |
aaagacttgggaattgataaaaggtttaaaatagtaaataacaagggaagact |
11275201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 11196490 - 11196305
Alignment:
| Q |
1 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196490 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
11196391 |
T |
|
| Q |
101 |
ctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttgga |
186 |
Q |
| |
|
|||||||||||| |||| ||||||| | || |||| ||| |||||||||| |||| ||| |||| |||||||||||||||| |
|
|
| T |
11196390 |
ctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttgga |
11196305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 11160904 - 11160719
Alignment:
| Q |
1 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11160904 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcagtggcatatggcgctg |
11160805 |
T |
|
| Q |
101 |
ctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttgga |
186 |
Q |
| |
|
|||||||||||| |||| ||||||| | | |||| ||| |||||||||| |||| ||| |||| |||||||||||||||| |
|
|
| T |
11160804 |
ctgtccatgcttctatattgagtggtgagcgtagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttgga |
11160719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 11199480 - 11199364
Alignment:
| Q |
1 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199480 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
11199381 |
T |
|
| Q |
101 |
ctgtccatgcttttata |
117 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
11199380 |
ctgtccatgcttctata |
11199364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 11156034 - 11155921
Alignment:
| Q |
4 |
aggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156034 |
aggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctg |
11155935 |
T |
|
| Q |
104 |
tccatgcttttata |
117 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
11155934 |
tccatgcttctata |
11155921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 11241826 - 11242009
Alignment:
| Q |
3 |
taggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgct |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
11241826 |
taggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggctgtggcatatggcgctgtt |
11241925 |
T |
|
| Q |
103 |
gtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttgga |
186 |
Q |
| |
|
|||||||||| |||| ||||||| | || |||| ||| |||||||||| |||| ||| |||| | |||||||||||||| |
|
|
| T |
11241926 |
gtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcatttctttgtcccttgga |
11242009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 11196189 - 11196117
Alignment:
| Q |
302 |
atgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctcc |
374 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
11196189 |
atgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
11196117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 11315188 - 11315240
Alignment:
| Q |
55 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtcca |
107 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
11315188 |
ttatgcaaaagcatcaatgctgataaggcggttgcatatggcgctgctgtcca |
11315240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 11319818 - 11319866
Alignment:
| Q |
121 |
agtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtca |
169 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11319818 |
agtggtgagttttgtgaaaagtttcaagatttgacattgagggaagtca |
11319866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 11155746 - 11155697
Alignment:
| Q |
298 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgct |
347 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
11155746 |
attcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgct |
11155697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 11132758 - 11132652
Alignment:
| Q |
4 |
aggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctg |
103 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| | || ||| |||||||||||||| |||| ||||| || | |||| ||| ||||||| |
|
|
| T |
11132758 |
aggattgtaaaagtacaacaaatattgagtgatttctttgaaggaaaggagttatgcaaaagcataaatgcagatgaagctattgcatgtggtgctgctg |
11132659 |
T |
|
| Q |
104 |
tccatgc |
110 |
Q |
| |
|
||||||| |
|
|
| T |
11132658 |
tccatgc |
11132652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 11132471 - 11132411
Alignment:
| Q |
291 |
tatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctagga |
351 |
Q |
| |
|
||||| |||||||||||| |||||||| || ||||||||| || ||||||||||||||| |
|
|
| T |
11132471 |
tattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctagga |
11132411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 586 - 546
Alignment:
| Q |
55 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatgg |
95 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
586 |
ttatgcaaaagcatcaatgcagatgaggcggttgcatatgg |
546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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