View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_5 (Length: 502)
Name: NF11878_low_5
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 82 - 293
Target Start/End: Original strand, 15443326 - 15443529
Alignment:
| Q |
82 |
acaaaggacatatatgcaaccatgcaagttggcaaaccacaacagttatttatgataactaacaactataaaacacaactcaatctccaacatatacaaa |
181 |
Q |
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| T |
15443326 |
acaaagaacatatatgataccatacaagttcgcaaatcacaacagttat----gataac----aactataaaacacaactcaatctccaacatatacaaa |
15443417 |
T |
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| Q |
182 |
ttaaaacatgaacagacaacgacaatatcaacataaaaactacagttgttgtcaggttttccattgtttaaaatttcatcaccagatatatcgttaaata |
281 |
Q |
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| T |
15443418 |
ttaaaacatgaacagacaacgacaatatcaacataaaaaccacagttgttgtcaggttttccattgtttaaaatttcatcaccagatatgtctttatata |
15443517 |
T |
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| Q |
282 |
tgttggccaaaa |
293 |
Q |
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| T |
15443518 |
tgttggccaaaa |
15443529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 15443501 - 15443554
Alignment:
| Q |
351 |
agatatgtctttatatatatgttggccaaaactataaggtcattttgatcattttt |
406 |
Q |
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| T |
15443501 |
agatatgtctttata--tatgttggccaaaactataaggtcattttgataattttt |
15443554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 450
Target Start/End: Original strand, 15443599 - 15443636
Alignment:
| Q |
413 |
gtagaaatgactctatggttgtacaaatatcattactc |
450 |
Q |
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| T |
15443599 |
gtagaaatgactctatggttgtacaaatatcattactc |
15443636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 502
Target Start/End: Complemental strand, 5042955 - 5042884
Alignment:
| Q |
431 |
ttgtacaaatatcattactcagatcacggtaaaaaatacggagttgaattttacttttttgttcaattatct |
502 |
Q |
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| T |
5042955 |
ttgtataaatatcatttctcatatcaaagtaaaaaatacggtgttgatttttacttttttgtttaattatct |
5042884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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