View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11878_low_6 (Length: 423)
Name: NF11878_low_6
Description: NF11878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11878_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 38539587 - 38539979
Alignment:
| Q |
10 |
gagcagagaagaactacaagctctactacgataataacaatggtccatccaagaagaaaaagtattatattttatttaatttcctctgaatgtagttaat |
109 |
Q |
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| T |
38539587 |
gagcagagaagaactacaagctctactacgataataacaatgctccatccaagaagaaaaagtattatattttatttaatttcctctgaatgtagttaag |
38539686 |
T |
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| Q |
110 |
gttcactttgttgttcgtatcagatcctaattgcaattttgtttgctcacaggaataaacaacccataccggtggacttaacggaggtatttgacttcag |
209 |
Q |
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| T |
38539687 |
gttgactttgttgttcgtatcagctcctaattgcaattttgtttgctcacaggaataaacaacccataccggtggacttaacggaggtacttgacttcag |
38539786 |
T |
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| Q |
210 |
atcaattctcgaatgtcatcaccgtaacagcgagcttcccaatggtgttatcgttcttcaggataagttcagttctccagtgttctctttgcaaaatcgc |
309 |
Q |
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| T |
38539787 |
atcaattctcgaatgtcatcaccgtaacagtgagcttcccaatggtgttatcgttcttcaggataagttcagttctccagtgttcaatttgcaaaatcgc |
38539886 |
T |
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| Q |
310 |
cctggtaattctctctttcttttcttttgcaatgtgtggtttacatcttcaaaatgcaagcttggaactaattataaataatctgatcggaaacttgc |
407 |
Q |
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| T |
38539887 |
cctggtaattctctc-----tttcttttgcaatgtgtggtttacatgttcaaaattcatgcttgaaattaattatagataatctgatcggaaacttgc |
38539979 |
T |
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