View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_high_4 (Length: 420)
Name: NF11879_high_4
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 39226961 - 39227365
Alignment:
| Q |
1 |
ttcctatatcttaaggaatttcacctgagaatctatatccatgaagaagcagaatctgtaagtttgtaaagtttccaatagaatttggtagtgatccgga |
100 |
Q |
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||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39226961 |
ttcctatatctgaagggatttcacctgagaatctatttccatgaagaagcagaatctgcaagtttggaaagtttccaatagaatttggtagtgatccgga |
39227060 |
T |
|
| Q |
101 |
taaacggttgttcgaaagatttatctctccaagtttataattgtttgtgtttgtgatttcttgttgtggaagaaaaccaccaagcaaattgttttgaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227061 |
taaacggttgttcgaaagatttatctctccaagtttagaagtgtttgtgtttgtgatttcttgttgtggaagaaaaccaccaagcaaattgttttgaagt |
39227160 |
T |
|
| Q |
201 |
tcaagaagtgaaagttgaggcaaataaagaaaaccctttggtattgaacctgttaaatagttttgtcctaaacgaactctttgaagtgtgtaacattgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227161 |
tcaagaagtgaaagttgaggcaaataaagaaaaccctttggtattgaacctgttaaatagttttgtcctaaacgaactctttgaagtgtgtaacattgac |
39227260 |
T |
|
| Q |
301 |
caaactcattaggcaaagaaccaaacaaaaaattgttaagcaagattagaatctttagcctttttccaagacataaagatttaggtactaatccagtgag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227261 |
caaactcattaggcaaagaaccaaacaaaaaattgttaagcaagattagaatctttaacctttttccaagacataaagatttaggtactaatccagtgag |
39227360 |
T |
|
| Q |
401 |
tttat |
405 |
Q |
| |
|
||||| |
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| T |
39227361 |
tttat |
39227365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 232 - 405
Target Start/End: Original strand, 25546394 - 25546567
Alignment:
| Q |
232 |
aaccctttggtattgaacctgttaaatagttttgtcctaaacgaactctttgaagtgtgtaacattgaccaaactcattaggcaaagaaccaaacaaaaa |
331 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25546394 |
aaccctttggtattgaacctgttaaatagttttgtcctaaacgaactctttgaagtgtgtaacattgaccaaactcattgggcaaagaaccaaacaaaaa |
25546493 |
T |
|
| Q |
332 |
attgttaagcaagattagaatctttagcctttttccaagacataaagatttaggtactaatccagtgagtttat |
405 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546494 |
attgttaagcaagattagaatctttaacctttttccaagacataaagatttaggtactaatccagtgagtttat |
25546567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 16734025 - 16733892
Alignment:
| Q |
225 |
taaagaaaaccctttggtattgaacctgttaaatagttttgtcctaaacgaactctttgaagtgtgtaacattgaccaaactcattaggcaaagaaccaa |
324 |
Q |
| |
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||||||||||| | ||| |||||||| || ||||||||||| || | | ||||||||| |||||||| |||||||||| |||||||| |||||||||| |
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| T |
16734025 |
taaagaaaaccatgtggaattgaaccagtgaaatagttttgaccaattctaactctttggagtgtgtagcattgaccaagatcattaggtaaagaaccaa |
16733926 |
T |
|
| Q |
325 |
acaaaaaattgttaagcaagattagaatctttag |
358 |
Q |
| |
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||||||| |||||||||||||| | ||||||||| |
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|
| T |
16733925 |
acaaaaagttgttaagcaagatcaaaatctttag |
16733892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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