View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11879_high_7 (Length: 256)
Name: NF11879_high_7
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_high_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 36028213 - 36027979
Alignment:
| Q |
6 |
aggagcagagacaagtagggacaacaagtatatagctagcatttcaaatactaaacgtagggcaacaagtagtttcaattttgaaatatttttcgaatta |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36028213 |
aggatcagaaacaagtagggacaacaagtatatagctagcatttcaaatactaaacgt-gggcaacaagtagtttcaattttgaaatattttctgaatta |
36028115 |
T |
|
| Q |
106 |
caagtatcaaaataaggccaaactgttagatcgtatcaaaaccattgttcttcaatgtaatgttacaaacaacaagaattgtatttcagacaattataat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36028114 |
caagtatcaaaataaggccaaactgttagatcgtatcaaaaccattgttcttcaatgtaatgttacaaacaacaagaattgtattt-------------- |
36028029 |
T |
|
| Q |
206 |
tcagaaatttgcacatagcgtaaattgaacttgtaaaatttaatgacgtac |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36028028 |
-cagaaatttgcacatagcgtaaattgaacttgtaaaatttaattacgtac |
36027979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 8879953 - 8879764
Alignment:
| Q |
35 |
atatagctagcatttcaaatactaaacgtaggg-caacaagtagtttcaattttgaaatatttttcgaattacaagtatcaaaataaggccaaactgtta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8879953 |
atatagctagcatttcaaatactaaacgtagggacaacaagtagtttcaattttgaaatattttccgaattacaagtatcaaaataaggccaaactgtta |
8879854 |
T |
|
| Q |
134 |
gatcgtatcaaaaccattgttcttcaatgtaatgttacaaacaacaagaattgtatttcagacaattataattcagaaatttgcacatagcgtaaattg |
232 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8879853 |
gatcgtatcaaaaccattgttttt-----aaatgttacaaacaacaagaattgtatttcagacaattataattcag----ttgcacatagcgtaaattg |
8879764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 16931056 - 16931264
Alignment:
| Q |
28 |
aacaagtatatagcta-gcatttcaaatactaaa--cgtaggg-caacaagtagtttcaattttgaaatatttttcgaattacaagtatcaaaataaggc |
123 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||| ||||||| |||| |||||||||||||| ||||||||| | |||||||||||| |||||||||| |
|
|
| T |
16931056 |
aacaagtatatagccaagtatttcaaatactaaaaacgtagggacaaccagtagtttcaatttcaaaatattttccaaattacaagtatgaaaataaggc |
16931155 |
T |
|
| Q |
124 |
caaactgttagatcgtatcaaaaccattgttcttcaatgtaatgttacaaacaacaagaattgtatttcagacaattataattcagaaatttgcacatag |
223 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
16931156 |
caaactgttagatcatatcaaaaccat---------------tgttacaaacaacaagagttgtatttcagacaaatataatt--gaaattcgcacatag |
16931238 |
T |
|
| Q |
224 |
cgtaaattgaacttgtaaaatttaat |
249 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
16931239 |
tgtaaattgaatttataaaatttaat |
16931264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University